Idim027149.1
Basic Information
- Insect
- Idaea dimidiata
- Gene Symbol
- -
- Assembly
- GCA_949358125.1
- Location
- OX442345.1:8304078-8323438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2 1.7e+02 3.7 1.1 1 23 231 254 231 254 0.90 2 24 0.0072 0.58 11.4 0.1 2 23 280 302 279 302 0.95 3 24 0.33 27 6.2 2.2 1 23 325 347 325 347 0.95 4 24 0.12 9.3 7.6 0.3 1 23 351 373 351 373 0.91 5 24 0.25 20 6.6 2.3 1 23 377 400 377 400 0.93 6 24 2.4 1.9e+02 3.5 0.7 2 23 406 428 405 428 0.92 7 24 0.0066 0.54 11.5 0.5 1 23 435 458 435 458 0.96 8 24 0.69 56 5.2 4.8 1 23 464 486 464 486 0.95 9 24 0.031 2.5 9.4 0.6 1 23 540 562 540 562 0.96 10 24 1.4 1.1e+02 4.3 0.1 3 23 592 613 590 613 0.86 11 24 0.42 34 5.9 0.2 2 23 634 656 633 656 0.92 12 24 0.00033 0.027 15.7 1.8 2 23 662 684 661 684 0.95 13 24 0.017 1.3 10.3 3.0 1 23 689 712 689 712 0.94 14 24 1.6 1.3e+02 4.1 0.6 2 23 715 737 715 737 0.93 15 24 0.00086 0.07 14.3 1.3 2 22 744 764 743 764 0.95 16 24 0.043 3.4 9.0 0.6 1 23 820 843 820 843 0.89 17 24 0.088 7.1 8.0 0.0 3 23 872 893 870 893 0.92 18 24 2.9 2.3e+02 3.2 0.2 2 23 916 939 915 939 0.91 19 24 0.0018 0.14 13.3 0.4 3 20 946 963 944 967 0.90 20 24 0.058 4.7 8.6 0.4 1 23 972 995 972 995 0.97 21 24 0.00056 0.045 14.9 0.2 2 23 1001 1023 1001 1023 0.94 22 24 6.2e-05 0.005 17.9 4.7 1 23 1027 1050 1027 1050 0.97 23 24 0.00092 0.075 14.2 0.5 2 23 1057 1078 1056 1078 0.96 24 24 0.022 1.8 9.9 1.7 1 23 1084 1107 1084 1107 0.96
Sequence Information
- Coding Sequence
- atggaGTTCAGCGAGGTATCTGTGAAGGACAGTCCCGGGCTGTGCCGGTGTTGCCTCTCTGAAGGCTGTTACAAAGACTTGGGTACTGAATACACTTGGATGAAAGAAACTGAAGTGTACGCTGATATGCTACTAGATTGCTTCGATGTTGGCATAACCCAACACAACGATGGTCCGAACGGCCCCGCGCGCCTCATCTGCGAGGTATGCATCACGCGGCTGCGCGACGCCTGCAACTTCAAGAAGCAGGTGCTGGAGTCGGAGAGCAAGTTTATTGACATGCTGGGCCGAGGGGAGTTCCGAGCTAAAGTGTTGGTGTACGAACAACAGTCTCCGCTGAAGACGGAGACTGTGGAGGTGGACACGACTCTTGACGACGCAGATACTGCAGCCGAAGTCGAATACCTGGATGATATCGACTTTCAACCTGAGGACACGGAGCCCCTCTCCAGCATAAAGCGCGAGCTCCCCCGCAAGCGTGGCCGACCGCGGAAGGACACCGCCGACCCTCCggagaagaaacaaaaaaagacAGAAGTTAAGAAGACCAAACTCGCTAAAGGTGACCCAAAAGAGGCTCAGAATAAGTCTTCCCTGTCAGCTGCAAAACGCTACAAGCTTGTTAAGGAAAACGCTGTGACAATCCTAGAAAGTTCAACAGCTGTACCTTTCAAATGGCAACTCCACAACTACCTATGTTTCTATTGCCATCTAACATTACCATCAATAGACGATATCAAACGACACACAGCGCAAAAACACAAGCAATCCAAGCCGAAAAACGCCGTCTTCTGCCTAGTCAGAGATACGAAAGTCAAAATTGAAATAAGCGTTCTCAATTGCACCATATGCGGAGAAAATTTTGGAAATTTCCGCGAGTTTGTCGAACATCTTAAAGTCGTTCACGATAAGAAGTTCAACCCGGGAGGTTACGGTGTTCTTCCGTACAAAATCGACAGTATTAATAGTGTTTTTCAGTGCGGGGAGTGTTCGGAATCATTTGCATATTTCATCAAATGTAACCAGCATATGAATGAGCACTTCGGTTCTTATATCTGCGAACTTTGCGGCAAATCTTATCTATCAGAGCAACGGCTTCGTGCCCACTCTTTGAACCACGGTTTTAAATTCAAGTGCACGAAATGCCTGGAGTCCTTTACCTCGATGATAAAGCGGACAAAGCACGAGAAGCAAGTCCACAATCATAGCCATATCAGTTGCAATTACTGTTCGGCGACATTTTTGAATTACAGAGCGAGGACTTTACACTATCGTTCTGACCATAAGGTAGCGGTGAAGGAATTCGCCTGCGATGGTTGCAGTCTCAAATTCCTACAATTGAGCAAGCTTAAACGCCATATTCTCCGAGTACATGACAAGGCGTCGCATCATTGTTGCGCTGTCTGTGGTCGTAAATACTTCGAACGCAGGGAATATATGAAGCATACCGCAAGGCATGAGGGTGGTAGTGAAAAGGGACAAGAGGGTTTCAGCTGCAatgattGTAAAAAAGGGAAGAAGGTAAAACGCTGCGAAACCTCCTCAATGCGGAGGCGACAGAATCTCCAACTATTGTTTAATAACACCACTGTACTCCCTTTTAAGTGGCGAGGCAAATATCTCTGTTTCTATTGTAGCAAAGACGCTTCAGAATACTCTGAATTGATAAAACATACGAAAATTCATGGTAAATGCTCAATAAACGACTATTCCTTAAAAGTTTTGAAGGGAGGACAAAACATGGAAATAAAAATTGACATTTCTAATATAAATTGTAAAGTTTGTAGTCAGAAATTTGATTCTGTGGATGCGATTGTTAACCATCTAGTCTTACAGCATAAGTTAGAATACGATCTGGGTGTAGATATGGCTACTGAAGAATACAGACTTTCTGACCTCAGCTGCTTAGCTTGTGAAGAGAAGTTTACGTATTTCGGCTATCTAGTCTCACACGTCAATGTGAAACATCCAAAGAATTGTCTAATCTGCGATCAGTGTGACCAGAAGTTTAATAAGAAAAGGGACTTGTTTTCCCATATGAAAAATTATCACAAGGAAGGGGGATATCATTGTGAATATTGCCCTCAAAGTTTTAGTTCTTTAAATATATTAAGGAAGCATAGAAGTAATAGACATGTCGCGAGTTGCAGTCTATGTCATTTGAGGTTACCGTCTGCCGCTTTAAAGCAAAAGCATATGGAACTAGAGCACCCTGACGATGGTTGTCTCCAATGCGACAATTGCGACAAAGAATTCCACACTAAACAGGGCTTACGAATGCATCTCCGAAAGTGCAAAGGAGTTTACGAATACATCATCAAGAAAGAAGACCTAACTATGGATCTCGATCAGAACTACGATCTAACGAAACGTCCAACAGTTAAACAAATCAGGGAGAACATTGTGGCAGTTCTAAATATGTCGACGGCCATACCTTttaatttctataaaaataaatttaactgtTTCTATTGCTCGAAAGATTTCCAAGATTCAGACGCTATGCGAGAGCATACAGTACTAGAGCATCCTATATGCGACGTCAAAGATGAATGCATAAGAAAATGCAAGGAATCAGTTGCTTGCGTTAAAATTGACATCTCAACGCTGGCATGCAAAATCTGCTTTGAATCGTTACCAGATTTGGATAATTTGCTCGATCATCTGATCGCGAAACATGACGCGAATTACGATAAGACAATCAAAACTTGTCTTCAACCATACCGGCTTATAAAAGACCATATGGTTTGTCCGAGCTGCCCCGATGAAATATTTCGTTTCTTCGGCACTCTACTCAAGCATGTCAATAAAAAACACACGAATAACAATATCATATGCGTCTACTGCGGGGAAACCTTCCGAAGAGACCAGAACTTACGCGTGCACGTTTGGAGACATCATCGCGATGGAAGATTCAGATGTAACCTCTGTGGTGCTGAATGCAACATCCCTTCACGTCTCTACATGCACATGGCAAAAGCTCACGGCGTGAAAGCCGCTAAATGCCCTAAATGTCCCGAAAGTTTTGCGACCCAGTATCTTCGCCAAAAACACTTGATAGAAGCCCATGATTCGGGACATAAATGTTCATATTGTGGTAAATTGTTTACCAGAAATTCGTTTATGAGAGACCACATTAGACGAACTCATCTGAAAGAGAAAAACGTGGAGTGTTCCATTTGTAACATGAAGTTTTTCAACAATATCCTCTTAAGACGGCATTTAGTAAGGCATAGTGGAGAGAAGAATTTCCATTGTGAAGTATGCGGGGAAAGGTTTTTCTGGAGGAAAAGTTTAAGAACCCATATTGCAAGAAATCATAAACAGTTGGAGGCTattcatattatgtaa
- Protein Sequence
- MEFSEVSVKDSPGLCRCCLSEGCYKDLGTEYTWMKETEVYADMLLDCFDVGITQHNDGPNGPARLICEVCITRLRDACNFKKQVLESESKFIDMLGRGEFRAKVLVYEQQSPLKTETVEVDTTLDDADTAAEVEYLDDIDFQPEDTEPLSSIKRELPRKRGRPRKDTADPPEKKQKKTEVKKTKLAKGDPKEAQNKSSLSAAKRYKLVKENAVTILESSTAVPFKWQLHNYLCFYCHLTLPSIDDIKRHTAQKHKQSKPKNAVFCLVRDTKVKIEISVLNCTICGENFGNFREFVEHLKVVHDKKFNPGGYGVLPYKIDSINSVFQCGECSESFAYFIKCNQHMNEHFGSYICELCGKSYLSEQRLRAHSLNHGFKFKCTKCLESFTSMIKRTKHEKQVHNHSHISCNYCSATFLNYRARTLHYRSDHKVAVKEFACDGCSLKFLQLSKLKRHILRVHDKASHHCCAVCGRKYFERREYMKHTARHEGGSEKGQEGFSCNDCKKGKKVKRCETSSMRRRQNLQLLFNNTTVLPFKWRGKYLCFYCSKDASEYSELIKHTKIHGKCSINDYSLKVLKGGQNMEIKIDISNINCKVCSQKFDSVDAIVNHLVLQHKLEYDLGVDMATEEYRLSDLSCLACEEKFTYFGYLVSHVNVKHPKNCLICDQCDQKFNKKRDLFSHMKNYHKEGGYHCEYCPQSFSSLNILRKHRSNRHVASCSLCHLRLPSAALKQKHMELEHPDDGCLQCDNCDKEFHTKQGLRMHLRKCKGVYEYIIKKEDLTMDLDQNYDLTKRPTVKQIRENIVAVLNMSTAIPFNFYKNKFNCFYCSKDFQDSDAMREHTVLEHPICDVKDECIRKCKESVACVKIDISTLACKICFESLPDLDNLLDHLIAKHDANYDKTIKTCLQPYRLIKDHMVCPSCPDEIFRFFGTLLKHVNKKHTNNNIICVYCGETFRRDQNLRVHVWRHHRDGRFRCNLCGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHLVRHSGEKNFHCEVCGERFFWRKSLRTHIARNHKQLEAIHIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00835844;
- 90% Identity
- -
- 80% Identity
- -