Ibis024964.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Idaea biselata
Gene Symbol
-
Assembly
GCA_958496205.1
Location
OY292405.1:13571127-13584489[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0002 0.015 16.4 9.1 1 23 216 238 216 238 0.98
2 15 2.5e-06 0.00018 22.5 0.4 3 23 252 272 251 272 0.98
3 15 6.7e-05 0.0049 17.9 2.1 2 23 281 302 281 302 0.98
4 15 0.00042 0.031 15.4 2.1 1 23 308 330 308 330 0.98
5 15 0.0031 0.23 12.7 0.5 1 17 336 352 336 353 0.94
6 15 0.00017 0.013 16.6 0.3 3 22 357 376 355 376 0.95
7 15 0.14 10 7.5 0.6 5 23 383 401 380 401 0.92
8 15 2.1e-05 0.0015 19.5 8.6 2 23 408 429 407 429 0.97
9 15 1.8e-05 0.0013 19.7 0.7 1 23 435 457 435 457 0.98
10 15 1.4e-05 0.0011 20.0 1.7 1 23 463 485 463 485 0.99
11 15 0.00017 0.013 16.6 0.7 1 23 491 513 491 513 0.98
12 15 0.0021 0.15 13.3 2.0 1 23 519 541 519 541 0.98
13 15 1.1e-05 0.00078 20.5 0.8 1 23 547 569 547 569 0.97
14 15 1.3e-06 9.8e-05 23.3 1.1 1 23 575 597 575 597 0.99
15 15 9.2e-05 0.0068 17.5 3.2 1 23 669 691 669 691 0.99

Sequence Information

Coding Sequence
ATGATATCATCATTTATGGCAACCGATGATAGTTCGATGTTGTCCTTCAAAATGGCTGGAACAACTAGTACTACCAcgacaaacactaaaatgcgtAATTTAAAGCTGGATAAAATATGTAGAGCTTGTTTGGAGATCAAGAGAGACATGAGACCTCTCTTTGAACAACTCACTGCTACGATGTTGATGGGAATTTCGAAAGTGCAGGTGTCAGTGGGCGACGGGCTCCCTACCCAGCTATGCCTGCAGTGCGTCCACCAGATATCGCGTTGTCACGCGTTCAAAGACCTGGTGGAGAGGAACGACCTCATTCTCAGGGAACACGTCAAGGCTCTGGTGGATGAGCAGCTCAAGAAGGAGCAGGAAGAGAAAGAGAAAATCCTAAACATGACCTGCACCGACGATATGCAATACATAGAGGTACCTCTAGCGAACCCTAGTCAGATACTGGACGGGTTCCTCGGACTGACTACCACGCCTGATGAGCCGGAGGAACTGGTCAAAGATGACGAACCTAAAGACAATGACGAGGAAAAGAAAGAAGACCAACCAACAAGCAAGGACGAGGAGGCTCTGAACTCTGACGAAGAGAACTACCTCCAAATGGTGGTGTTCCAGGCGACGTCCACAATGGCGCCTGGCCGCCACGTCTGCAACCTTTGCCACAAGGAGTTCAAACACGCGCGCTGGTTGAAGCACCACATGCGGTCGCATACCAACTGGATCAAGGCCAATTGTAAGAAGCCGCCTATGTGCCCTATTTGCCAGAGGACTTTTAagGGTCCAGGCATGTTGAAAATGCACATGCGTACCCACGAGACCCGTCCCGCGAAGCAGCCGACTTGCTCCGTCTGTCAACGCACATTCCCGACCAAGACGCTCCTCTACCGCCACCGACAGACGCACTTTGAGCAGAAGACACACCAGTGTACGGTGTGTGAGAAGAGGTTCTTTAGTGGATACGCGTTGAGGTCTCACATGGCGCGGCATAGGGGAGAACGGCCTTACGTCTGTACGAATTGCAACAAGAGCTTCTATAATCCTACTGATTTGAAGATGCCTGATATCTGCAGTAACTGCAATAAGAGTTTCTACAATATTATCGATTTGAAGAGGCATATAAGACGGATGTCTGATGTCTGCATTAACTGCACCAAGAGTTACTACAATATTACTGATTTAAAGGTACATTTCCGGTTGCATACGGGTGAGAAGCCGTTAAAATGTACAGAATGCAACAAAACGTTCCGAAGGCACTCCACCCTATGCCAGCACATGAAGAAACATCGCGGCATCAGGAACCACGTGTGCAGTATATGCAACAAAGGGTTCTATGAAGTTTCCAAACTTAACGCGCATATGAGGGTACATACAGGAGAGCGTCCATACGAGTGTCAGTTCTGCACGCGTCGCTTCGCGCAGCAATCCGCGCTCATCTACCACCGTCGCACGCACACCGGCGAGAAGCCTTACTCCTGCAAGCTGTGCCCTGCGAAGTTCACCACCTCCAGTGCCAGGAACAACCACATGGTCACTCACACGGGCCACAAGAGGTTCGTCTGCCCGATCTGCTTCAAAGGCTGCATGTCGAAGACCGACCTGCGCATCCACACCAGCAAGCACACGGGCGAGAAGCTGTTCTCGTGCGAGACGTGCGGCCAGCGGTTCAGTTCCGCCTCCTACCTCGCCGTGCATCGCCGCTTCCACACCGGGGAGAGGAAGTACCAGTGCAGTGTCTGTGGGAAAGGTTACATAGAATCAAGTTCGTACAAGAAACACATGAAGACCCACGAGAAGTCAGACGACGGTGAAGACAGTCACGACCACAGCGACCATGCGGACAAAATGAAGGCAGCCGATGGTAACGCTGTGGACCATCATGACGGACAAAATCAAGAAGTATCCAGTCAAACAGAGAGCCAGACCATAGAGGTCCACGTCCAGGAGATCCAGCCCCAGCAGCTCCAGGAGCAACAAGTCCAGCAGGAGCCACAACAGAAGCGGTACAAGTGTGGGATTTGCGTCAAGACATACATGTACCTGCACAGCTTGAAGAAACATATGATGACCCATATACCGGAGGTGCAGAAACAACAAGAGCACATCCAACAACAACAAGtgcaacagcagcagcaacaCCAGCAGCAACAGACCGTGCAACAAGTGCAGCAAACCGTGGCGCAGGTGCAGCAGGTCACGCCGCAACAAGTGACGCAACACGCGCATTTGCAGCAGTTGCAGCAGATGCAGCATCAGCAGTTGCAGCAGCAGGTGTTGCAGGTGGGAGGGGTGCAGCAGTTGACTATGCCGATACATCAGCAGTTGCCGCAGAGCATCACCGTTAACGGCGTTCAGGGCGGGCACGGGCACGCGCAGCACGCGTACCCCGTCATATCGTCGGTGCAGTCGTTGCAGCTGCAGCAGACGCAACAGGTCAACACGCAGCCGCAGCAACTGCACGTCCAGACGATACAGATACATCCACAGCAACAGCACCAGCCTATACAGATACATGCGGTGGGCGTTCAACAAGTCCAGCAACAACAACTTCACGTCGCGACGTCTTCTTGCCAAACCATGCTGCCTAACATACTGCAGTTGCAGCCGGCTACCGTAGTATCCGGCCTGGGTCAGCAGGATCTGAGCGGGGTGGCGCACCGCATCATACTGCAGCAGCAGCCCACGGCCGGGCATCCCGCCGTCTACACCATACATCACTGA
Protein Sequence
MISSFMATDDSSMLSFKMAGTTSTTTTNTKMRNLKLDKICRACLEIKRDMRPLFEQLTATMLMGISKVQVSVGDGLPTQLCLQCVHQISRCHAFKDLVERNDLILREHVKALVDEQLKKEQEEKEKILNMTCTDDMQYIEVPLANPSQILDGFLGLTTTPDEPEELVKDDEPKDNDEEKKEDQPTSKDEEALNSDEENYLQMVVFQATSTMAPGRHVCNLCHKEFKHARWLKHHMRSHTNWIKANCKKPPMCPICQRTFKGPGMLKMHMRTHETRPAKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCTNCNKSFYNPTDLKMPDICSNCNKSFYNIIDLKRHIRRMSDVCINCTKSYYNITDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCSICNKGFYEVSKLNAHMRVHTGERPYECQFCTRRFAQQSALIYHRRTHTGEKPYSCKLCPAKFTTSSARNNHMVTHTGHKRFVCPICFKGCMSKTDLRIHTSKHTGEKLFSCETCGQRFSSASYLAVHRRFHTGERKYQCSVCGKGYIESSSYKKHMKTHEKSDDGEDSHDHSDHADKMKAADGNAVDHHDGQNQEVSSQTESQTIEVHVQEIQPQQLQEQQVQQEPQQKRYKCGICVKTYMYLHSLKKHMMTHIPEVQKQQEHIQQQQVQQQQQHQQQQTVQQVQQTVAQVQQVTPQQVTQHAHLQQLQQMQHQQLQQQVLQVGGVQQLTMPIHQQLPQSITVNGVQGGHGHAQHAYPVISSVQSLQLQQTQQVNTQPQQLHVQTIQIHPQQQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVVSGLGQQDLSGVAHRIILQQQPTAGHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00836786;
90% Identity
-
80% Identity
-