Ibis012969.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958496205.1
- Location
- OY292398.1:14332777-14346976[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.13 3.8e+03 -2.4 2.8 54 72 52 70 26 103 0.38 2 2 1.7e-71 5.2e-67 227.0 17.8 1 258 119 374 119 389 0.88
Sequence Information
- Coding Sequence
- ATGGTTCGTCGTTCGGGGACAGCCACTCCAGACAATAGCGACGAAGAGAGCGGCGAAGTCTTCACTGATGGAGACTTCGAAGACAGTGACGAAGATACTATCGtcgaaaataaagataaaactaATAACAATATAAATGAGACTGTCAACGAAGAAGTACAGAAGAAACTAACCAATGGGAACTCTTCAAAATCTTCAGAGTCATCGTTCAAAGAGTCCAAAATAAATGGACGTAAGAACAGTGAACCCCATTCGAGTGATGCTGAAAGTCACAGTGGATTGGATGGAAGAAGAGATTCGCATGGTGACCAAAGTCCTTCGATTGTCGGCATTCTTGGAAACCAACATAatcatGCTGAACAGCGTCTAGCCGCCCGCCGCGCGGCGCGAGCCGAGGCGCGGGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGAGGGAGCAAGAGGACCATGCCGACAAGGCGTATGACATGTATGCCGAGACAGTAGGTCGGCGCGCGCCGCGGCTGGCTGCCCTCAGCCCGGCCGTTGTGCACTCGCCGCGACGCAGTTCCGAAGACTCCGCAGACGATACTTTCAGCATCAAAGATTTAAGgCATGAGCTGAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCGTCAGGGTACCAGCTCGAACTGCTCAAGGACAGAATCGAGGAGTTGCATGAGGAGCATGCGCAGTTACAGCGGGAGCACCGCGAGAAATGTTCATCGCACGAGCGTCTAAAGCGGGAATACGTGTCGCTAGAGCGGGAGGTGAGCGGCGCGCGGGCGGGTATCCTAGCGCGAGACCAGGCCGCCTGCCACGCGGGGTACGCGTTCGTGGACGCGGGGGAGGGGGCaacgggggcgggggcgggggcagGCGGGGGGGACAGCCCCCGGGTGCCCGCGCTCGCGCTCGTCTCGCACGACGCACAGAAACTACTTGATGATGCCGGGGAAGGGACGCTCGACGTCCGGTTGGCGTCGCTGGCGAGCTCGAAGCAGGCGCTGGAGTCGGAGGCCCGGGAAGCTCTGAACCGAGTGGAAGAGCTGGAGACAGAGAACAGCCACCTGACGAAGAGACTGGACAAGTTGAAGAACGCCAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MVRRSGTATPDNSDEESGEVFTDGDFEDSDEDTIVENKDKTNNNINETVNEEVQKKLTNGNSSKSSESSFKESKINGRKNSEPHSSDAESHSGLDGRRDSHGDQSPSIVGILGNQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAPRLAALSPAVVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAASGYQLELLKDRIEELHEEHAQLQREHREKCSSHERLKREYVSLEREVSGARAGILARDQAACHAGYAFVDAGEGATGAGAGAGGGDSPRVPALALVSHDAQKLLDDAGEGTLDVRLASLASSKQALESEAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -