Ibis014337.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Idaea biselata
Gene Symbol
DIS3L2
Assembly
GCA_958496205.1
Location
OY292399.1:7540089-7543854[-]

Transcription Factor Domain

TF Family
CSD
Domain
CSD domain
PFAM
PF00313
TF Group
Beta-Scaffold Factors
Description
In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-05 0.34 11.7 0.0 5 38 309 343 306 353 0.80
2 2 1.7e-07 0.0025 18.5 0.0 30 70 447 487 436 489 0.92

Sequence Information

Coding Sequence
ATGCCCAACATGCAAGCAAAGTTATCAGACGCCGAAGATCAAAGTGGACCTTCAACAACAGAGCTGTCCACGTCTTCACAGTCTCTCCCGCCACGACGCACAACAAGTAATGAAGAAGAAAATGTGAGGCATACACCTCACCGGACCAGGCACCCATCGTCAAACCAGGACCAAACAAATACGGGAGTTGCACAACTTACACATTTGTTGGAAAACACGCACGTAAACAGTACACCCAACGAAAGGGAATCAAAACAAAATGCAAGCTCTACAGGCAAAAATTCTAGAAAAAAGAGAAAGAAAAAGTTAAATCTGAATACCTCTAACATTGGACAGAATCAGGTGCCGGTGTATGGTTCGCCGAGTATTTCATCGGTGCATAATTTCTTTAGTCAAGGAAGCTCGCCGCATGCAAACACTGGCGCCAGGTTTGTAGAGAATATGAGGCACCACCCTCATTTCCAGTACATGCAGAGTGTCCAATCTATTGAAATGCACCAAGTGACATCAATTCCTATACCGAGAAGTCCTCGAGTAATGAATCACCCTGCAAGTATGCCTAACACTCCTCTAGTTCATTTACACCAGATGCCAGGCTCTGTGAGTATCCCATGTTCCCCTTTAGCTAATCCGCAGCTCAATATACCTTTCATGCAGAAcatgttttatcaaaatatgATGCAACATCCTTTGTTGAGTCAAGCCTACAGTAATATTAATGTTCAAAACCATAAAAACACCCCGTCGCCAAAGTCTAAAAATGAATcaccaaaaaataagaaaaagaaaaaaggtCCTACTGATGAAAAGAAATTTGACAAATATATGTCAGAGGAAGAAATTGCAGaaggattaaaaaataacactctCATTGAAGGTATAATAAGGATTAACCCTAAACAGTTTCAACATGCATACATTTCAAGTGACGATCGTGATGAGCAAGATGTTTTTATTGATGGACTCAAAAATCGTAATCGTGCATTGGAAGGGGATGTAGTGGTTGTACAACTGGTAGAAAGTGATAGTGAAGAAAGTCAAGACAACCCTAACACAGAACAAAAATCACAAGCACCATCAACAGACCAACAGTCAACAACAGAACAACCATCAACTACTGaacaacaaatgaaacaaaGACGAGgaaaagttgtttttattaaagaaaaaattcaTAAGAGAACTTGTATTGGTAATCTCAAATTGATGCCTGATAAGAATAGACAAAGAGCCCTTTTTATTCCTCGTGATCACAGGATACCAAGACTCAATATACCATTCACTTGCTGGCCAGATAACTTCTATCAAGATGCCAAAAGTTATGAGAGTACATTATTTTTAGCTCAGATTGTTGATTGGTCAGACACAAGATTTGCTGTTGGAAAAATACTAAAGAACATCGGTCAATCTGGAAATATGGTGACTGAATCTATGGCTATACTGGCTCAAAATGACTTAGATGTTTCTCCCTTTGGACCTGAAGTTAGAGATCTCTTTCCTCGTTTGGATTACAAAATCCCAATAGAAGAAATAGCCAAAAGGGAAGATTGTCGAAAACTTTGCATTTTCAGCATAGATCCAAGCAACTGTCGCGATATTGATGATGCAGTGTCATGCAGGGAACTTGAAAATGGAAATTATGAAGTTGGTGTTCACATTTCAGATGTAGCACATTATTTGCAGGAAAACACAATTTTGGATGAAAAAGTTGCAGAAAAGGCTACTACAATATACTTAACGGAGAGAGCATACCACATGCTCCCAGATGAACTCTGTATGCTTTGTTCACTCTTTCCTGGAGTTGATAAATTAGCATTTTCAGTATTTTGGGAGATAACAAAAGAAGGAAAAGTACTTTCTCACCGATTTGCTAAAACTGTAATTAAATCCTGTTCTCAACTAGCTTATGATCATGCACAAGCAATTTTAGAAGACAGGGATGATGCTGACAAAGATTTCCCAGAAACATACAATGGGTTCCAATTTGCAGACatacaaaaatctattaaaattgtAGGAGGAATGGCGTCAACATTCAGGAAAAATAGATTTGATGGTGGTGCTCTCAGAATTGATCAAGTAAAAGTAAGTTTTCATTTGAGTCCTGCCAATGGCTTGCCTGAGTCATTCATAATATATGAAAATAAGGAGAGTCATCAAATGATTGAGGAGTTCATGTTACTGGCAAATATGACTGTGGCTAAGAGAATACACAATGATCATCCACAACTAGCATTTTTGAGATGTCACCCTGCTCCAAGTGGCTTTATGTTGAAACAAttggtaaagtctttaaagCCAATGGGTATAGAGTTGGATATAGCATCAGCAGGGGATTTGCATCGATCTTTAATGCCATATGTATGTTCAGAAAACTTAGATAAAGGGAGAGCTATGGTGCTGAATATGTTATGTGCAAAACCAATGGCCCGAGCTAAATATTTTTGTGCTGCTAATTGTGAGGATGAAGACTTTCATCATTATGCATTGAATGTCCCATTGTATACTCATTTCACCAGTCCAATAAGACGATATGCTGATATCATGGTTCATAGGTTATTGGCAGCAAGTCTTAAATGTCGTGAACCTCCGACTTGGCCAGTCGATCAAGTTTGCATGGTAGCTGCTCAATGCAACAAACAGAAGTACAATTCAAAGAAGGCCAGTGAAATGTCCTCCGAGCTCTACATGTTGAAATACATAGAAATGAACTCTCCTGTTCTTACTGAGGCAGTTGTGGTAGATGTCagagaaaaatacattgatgtTATTATTATAGCGATGGGCTTAAACAGAAGAATATTTTTCAACAATGACTTCCCCGGAGATTTTAACTGCATAAAACATGAAGACAGTGCAAAAATGTCGAAAATGGAACTAAAGTGGCGTGAAGAAGATGGTAATCCGGAAGTTAGACAAGTAATAGAAGTGTTCTCTATACTCAACGTTCAATTACACAAAGGAGATGACATGGTCAAAGTAGAAACTAAACTTATAAGGCCACAATAA
Protein Sequence
MPNMQAKLSDAEDQSGPSTTELSTSSQSLPPRRTTSNEEENVRHTPHRTRHPSSNQDQTNTGVAQLTHLLENTHVNSTPNERESKQNASSTGKNSRKKRKKKLNLNTSNIGQNQVPVYGSPSISSVHNFFSQGSSPHANTGARFVENMRHHPHFQYMQSVQSIEMHQVTSIPIPRSPRVMNHPASMPNTPLVHLHQMPGSVSIPCSPLANPQLNIPFMQNMFYQNMMQHPLLSQAYSNINVQNHKNTPSPKSKNESPKNKKKKKGPTDEKKFDKYMSEEEIAEGLKNNTLIEGIIRINPKQFQHAYISSDDRDEQDVFIDGLKNRNRALEGDVVVVQLVESDSEESQDNPNTEQKSQAPSTDQQSTTEQPSTTEQQMKQRRGKVVFIKEKIHKRTCIGNLKLMPDKNRQRALFIPRDHRIPRLNIPFTCWPDNFYQDAKSYESTLFLAQIVDWSDTRFAVGKILKNIGQSGNMVTESMAILAQNDLDVSPFGPEVRDLFPRLDYKIPIEEIAKREDCRKLCIFSIDPSNCRDIDDAVSCRELENGNYEVGVHISDVAHYLQENTILDEKVAEKATTIYLTERAYHMLPDELCMLCSLFPGVDKLAFSVFWEITKEGKVLSHRFAKTVIKSCSQLAYDHAQAILEDRDDADKDFPETYNGFQFADIQKSIKIVGGMASTFRKNRFDGGALRIDQVKVSFHLSPANGLPESFIIYENKESHQMIEEFMLLANMTVAKRIHNDHPQLAFLRCHPAPSGFMLKQLVKSLKPMGIELDIASAGDLHRSLMPYVCSENLDKGRAMVLNMLCAKPMARAKYFCAANCEDEDFHHYALNVPLYTHFTSPIRRYADIMVHRLLAASLKCREPPTWPVDQVCMVAAQCNKQKYNSKKASEMSSELYMLKYIEMNSPVLTEAVVVDVREKYIDVIIIAMGLNRRIFFNNDFPGDFNCIKHEDSAKMSKMELKWREEDGNPEVRQVIEVFSILNVQLHKGDDMVKVETKLIRPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00836277;
90% Identity
iTF_00836277;
80% Identity
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