Iave001934.1
Basic Information
- Insect
- Idaea aversata
- Gene Symbol
- -
- Assembly
- GCA_907269075.1
- Location
- OU026112.1:2661308-2667934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 1.1e+02 4.2 0.6 1 20 33 52 33 56 0.89 2 17 0.59 46 5.3 0.1 2 23 79 101 78 101 0.94 3 17 5 4e+02 2.4 0.1 2 16 124 138 123 140 0.83 4 17 0.0017 0.13 13.3 0.6 1 23 168 191 168 191 0.93 5 17 0.44 34 5.8 0.0 3 23 214 235 212 235 0.94 6 17 0.084 6.6 8.0 0.0 2 20 258 276 257 278 0.93 7 17 0.0017 0.13 13.3 0.6 1 23 304 327 304 327 0.93 8 17 0.28 22 6.3 0.0 3 23 350 371 348 371 0.94 9 17 1.1 86 4.5 0.0 2 20 394 412 393 414 0.91 10 17 0.41 32 5.8 1.0 1 22 440 461 440 463 0.86 11 17 1.7 1.3e+02 3.9 0.1 2 23 485 507 484 507 0.93 12 17 0.00018 0.014 16.4 0.6 2 23 530 551 529 551 0.97 13 17 0.36 28 6.0 0.2 1 21 555 575 555 578 0.94 14 17 0.00024 0.019 16.0 1.6 1 23 596 619 596 619 0.94 15 17 1.5e-05 0.0012 19.8 2.6 1 23 625 648 625 648 0.96 16 17 0.0017 0.13 13.3 3.1 1 20 654 673 654 676 0.93 17 17 3.8e-05 0.003 18.5 0.6 1 23 682 704 682 704 0.96
Sequence Information
- Coding Sequence
- ATGAATCCGTATAAGCTGGCTCTACAGAAGACGCACCTACTGCAGCAAATCCTTGCGTCGTCGAACGCTAATCCTGTCAAATTCAATGGTCAGTTATACCGCTGTTACTACTGCCTTGAACAATTCCTGAGCCCGAACAAGCTGAAGTCACACGCTGATGACGATCACGCGAATGACACCATTACTCACAAACAGAGAGATAATATGATTATAAAACTGGACGTCACAAATTTGACTTGCAAACTATGTGGGAACTCTATGAACTCCATCCAGGACTTAATCGAACATTTAAAGGAAGATCACGAGAAGAAATTTCAAACTGAAGATGTATCTAAGTTAATTTTACCATTTATTTACGAAGATGGCTTAAAATGTGCCGTCTGCGGTATTAGTTTAAGCAAAAAAGTTAGCATGTTTAAGCTGACTCTACAGAAGACGGACCTACTGCAGCAACTGCTTGCGTCATCGAACGCTACTCCTGTCAAATTCAATGGACAGGTTTACCGCTGTGGCTACTGCTTAGAACGGTTTATTAGCCCGAAGAAGCTGAAGTCTCACACTGAAGAAGACCACGCGAACGACACCATTACTCACACGCAGAGAGAGAGAGTCGTAAAACTGGACGTAACAACTCTGGCTTGCAAACTATGTGGGAACTCTATTAACTCCATCCAGGAATTGATCGAACATTTAAAGGAAGATCACGAGAAGAAATTTCAAACTGAAGATGTTTCTACCTTAATTTTGCCATTTATTTACGATGATGGCTTAAAATGTGCCATCTGTGGTATTAATTTAAGCAATAAAGATAGCGTGAATTGGCATAAGTTGGCTCTACAGAAGACGGACCTACTGCAGCAACTCCTTAAGTCGTCGAACGCTACTCCTGTCAAATTCGATGGACAGGTTTACCGCTGTGGCTACTGCTTGGAACGGTTTATTAGCCCGAAGAAGCTAAAGTCTCACACTGAAGAAGACCACGCAAACGACACCATTACTCATAAGCAGAGAGAGAAAGTCGTAAAACTGGACGTAACAAATCTGGCTTGCAAACTATGTGGAAACTCTATTAACTCCATCCAGGACTTAATCGTACATTTAAAGGAAGACCACGAGAAGAAATTTCAAATTGAAGATGTTTCTACCTCAATTTTACCATTTATTTACGATGATGGCTTGAAATGTGCCATCTGTGGTATTAATTTGAGCAATATAGATAGCGTGAATTGGCATAAGCTGGCTCTACAGAAGACGGACTTACTACAGCAACTGCTTGCGTCATCGAACGCTACTCCTGTCAAATTCAATGGACAGTTTTACCGCTGTGGCTACTGCTTAGAACGGTTTATGAGCCCGAAGAAGCTGAAGTTTCACACTGAAGAAGATCACGCGAACAACACTATTACTCACAAGCAGAGAGAGAAGGTCGTAAAACTGGATGTAACAAATCTGACTTGCAAACTATGCAAGAATATTATAAACTCAATCGAGGACTTGATTACTCATTTAAAAGACGAACACGACAAGATATTCCAAACCGAGGATATATCTACCTTCATTATACCATTTATCTACGAAGATAGTTTGAAATGCACCGTCTGTAATCTCAAATTAAGTAATTCTCGAAGTTTAGTTGTCCATATGAATACGCATTTCGGCAATTTCATCTGCGATATTTGCAGTGCGAGTTATATGATACGAGACGGATTAGAGGCACATTTAAAATGTATTCATAAGAAAGAGCGACGTGTAACGAATACCAAAAAAAGGGGTTATAATAGGAATTGTAAGTGTCCACATTGCGAGCTAGTGTTCACTAGACTGCCGGCTTTAAGACTTCATTTGAAAGAAGAGCATGGTGACGCCAAACCTTTCGCTTGTCAAACTTGTGATCGCACTTACACCAAATCCAGTCACTTATGGAGCCACATAAAGAGAGATCATTTAAAAGAACGGAAGCATAAGTGCAATTTTTGCGAGAAAGGTTTCTTTTCTAAGGATAAACTAACTAAACATTTGCCCGTACACACAGGGGAAGTAAAATACTTGTGTGATGTTTGTCCTAAGGCGTTTAAGATGCAATACAGTTTATCCGTTCATAAGAAGACGCATGTTAATGATAGACGGTTAAAGTAA
- Protein Sequence
- MNPYKLALQKTHLLQQILASSNANPVKFNGQLYRCYYCLEQFLSPNKLKSHADDDHANDTITHKQRDNMIIKLDVTNLTCKLCGNSMNSIQDLIEHLKEDHEKKFQTEDVSKLILPFIYEDGLKCAVCGISLSKKVSMFKLTLQKTDLLQQLLASSNATPVKFNGQVYRCGYCLERFISPKKLKSHTEEDHANDTITHTQRERVVKLDVTTLACKLCGNSINSIQELIEHLKEDHEKKFQTEDVSTLILPFIYDDGLKCAICGINLSNKDSVNWHKLALQKTDLLQQLLKSSNATPVKFDGQVYRCGYCLERFISPKKLKSHTEEDHANDTITHKQREKVVKLDVTNLACKLCGNSINSIQDLIVHLKEDHEKKFQIEDVSTSILPFIYDDGLKCAICGINLSNIDSVNWHKLALQKTDLLQQLLASSNATPVKFNGQFYRCGYCLERFMSPKKLKFHTEEDHANNTITHKQREKVVKLDVTNLTCKLCKNIINSIEDLITHLKDEHDKIFQTEDISTFIIPFIYEDSLKCTVCNLKLSNSRSLVVHMNTHFGNFICDICSASYMIRDGLEAHLKCIHKKERRVTNTKKRGYNRNCKCPHCELVFTRLPALRLHLKEEHGDAKPFACQTCDRTYTKSSHLWSHIKRDHLKERKHKCNFCEKGFFSKDKLTKHLPVHTGEVKYLCDVCPKAFKMQYSLSVHKKTHVNDRRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00834847;
- 90% Identity
- iTF_00834847;
- 80% Identity
- iTF_00834847;