Basic Information

Gene Symbol
-
Assembly
GCA_907269075.1
Location
OU026112.1:2661308-2667934[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.2 3.9e+03 -1.4 0.0 17 26 33 42 26 56 0.81
2 16 0.00082 1.4 9.6 0.5 10 43 71 101 63 102 0.89
3 16 5.4 9.3e+03 -2.6 0.1 18 29 124 135 122 140 0.81
4 16 0.45 7.8e+02 0.8 0.0 14 23 165 174 158 191 0.78
5 16 0.0012 2 9.1 0.1 13 43 208 235 202 236 0.86
6 16 0.11 2e+02 2.7 0.1 18 31 258 271 254 276 0.86
7 16 0.21 3.6e+02 1.9 0.0 10 24 297 311 294 327 0.79
8 16 0.0027 4.7 7.9 0.1 12 43 343 371 335 372 0.88
9 16 0.63 1.1e+03 0.4 0.0 18 28 394 404 390 409 0.86
10 16 0.48 8.4e+02 0.7 0.0 13 23 436 446 430 451 0.77
11 16 0.00013 0.22 12.2 0.2 12 43 479 507 472 508 0.90
12 16 0.21 3.7e+02 1.9 0.7 15 30 527 543 519 552 0.73
13 16 0.18 3.2e+02 2.1 1.0 17 44 555 579 549 579 0.88
14 16 0.41 7.2e+02 0.9 1.0 17 43 596 619 592 620 0.78
15 16 0.0043 7.4 7.3 1.3 19 43 627 648 623 649 0.93
16 16 0.00018 0.31 11.7 5.3 1 32 638 670 638 677 0.82

Sequence Information

Coding Sequence
ATGAATCCGTATAAGCTGGCTCTACAGAAGACGCACCTACTGCAGCAAATCCTTGCGTCGTCGAACGCTAATCCTGTCAAATTCAATGGTCAGTTATACCGCTGTTACTACTGCCTTGAACAATTCCTGAGCCCGAACAAGCTGAAGTCACACGCTGATGACGATCACGCGAATGACACCATTACTCACAAACAGAGAGATAATATGATTATAAAACTGGACGTCACAAATTTGACTTGCAAACTATGTGGGAACTCTATGAACTCCATCCAGGACTTAATCGAACATTTAAAGGAAGATCACGAGAAGAAATTTCAAACTGAAGATGTATCTAAGTTAATTTTACCATTTATTTACGAAGATGGCTTAAAATGTGCCGTCTGCGGTATTAGTTTAAGCAAAAAAGTTAGCATGTTTAAGCTGACTCTACAGAAGACGGACCTACTGCAGCAACTGCTTGCGTCATCGAACGCTACTCCTGTCAAATTCAATGGACAGGTTTACCGCTGTGGCTACTGCTTAGAACGGTTTATTAGCCCGAAGAAGCTGAAGTCTCACACTGAAGAAGACCACGCGAACGACACCATTACTCACACGCAGAGAGAGAGAGTCGTAAAACTGGACGTAACAACTCTGGCTTGCAAACTATGTGGGAACTCTATTAACTCCATCCAGGAATTGATCGAACATTTAAAGGAAGATCACGAGAAGAAATTTCAAACTGAAGATGTTTCTACCTTAATTTTGCCATTTATTTACGATGATGGCTTAAAATGTGCCATCTGTGGTATTAATTTAAGCAATAAAGATAGCGTGAATTGGCATAAGTTGGCTCTACAGAAGACGGACCTACTGCAGCAACTCCTTAAGTCGTCGAACGCTACTCCTGTCAAATTCGATGGACAGGTTTACCGCTGTGGCTACTGCTTGGAACGGTTTATTAGCCCGAAGAAGCTAAAGTCTCACACTGAAGAAGACCACGCAAACGACACCATTACTCATAAGCAGAGAGAGAAAGTCGTAAAACTGGACGTAACAAATCTGGCTTGCAAACTATGTGGAAACTCTATTAACTCCATCCAGGACTTAATCGTACATTTAAAGGAAGACCACGAGAAGAAATTTCAAATTGAAGATGTTTCTACCTCAATTTTACCATTTATTTACGATGATGGCTTGAAATGTGCCATCTGTGGTATTAATTTGAGCAATATAGATAGCGTGAATTGGCATAAGCTGGCTCTACAGAAGACGGACTTACTACAGCAACTGCTTGCGTCATCGAACGCTACTCCTGTCAAATTCAATGGACAGTTTTACCGCTGTGGCTACTGCTTAGAACGGTTTATGAGCCCGAAGAAGCTGAAGTTTCACACTGAAGAAGATCACGCGAACAACACTATTACTCACAAGCAGAGAGAGAAGGTCGTAAAACTGGATGTAACAAATCTGACTTGCAAACTATGCAAGAATATTATAAACTCAATCGAGGACTTGATTACTCATTTAAAAGACGAACACGACAAGATATTCCAAACCGAGGATATATCTACCTTCATTATACCATTTATCTACGAAGATAGTTTGAAATGCACCGTCTGTAATCTCAAATTAAGTAATTCTCGAAGTTTAGTTGTCCATATGAATACGCATTTCGGCAATTTCATCTGCGATATTTGCAGTGCGAGTTATATGATACGAGACGGATTAGAGGCACATTTAAAATGTATTCATAAGAAAGAGCGACGTGTAACGAATACCAAAAAAAGGGGTTATAATAGGAATTGTAAGTGTCCACATTGCGAGCTAGTGTTCACTAGACTGCCGGCTTTAAGACTTCATTTGAAAGAAGAGCATGGTGACGCCAAACCTTTCGCTTGTCAAACTTGTGATCGCACTTACACCAAATCCAGTCACTTATGGAGCCACATAAAGAGAGATCATTTAAAAGAACGGAAGCATAAGTGCAATTTTTGCGAGAAAGGTTTCTTTTCTAAGGATAAACTAACTAAACATTTGCCCGTACACACAGGGGAAGTAAAATACTTGTGTGATGTTTGTCCTAAGGCGTTTAAGATGCAATACAGTTTATCCGTTCATAAGAAGACGCATGTTAATGATAGACGGTTAAAGTAA
Protein Sequence
MNPYKLALQKTHLLQQILASSNANPVKFNGQLYRCYYCLEQFLSPNKLKSHADDDHANDTITHKQRDNMIIKLDVTNLTCKLCGNSMNSIQDLIEHLKEDHEKKFQTEDVSKLILPFIYEDGLKCAVCGISLSKKVSMFKLTLQKTDLLQQLLASSNATPVKFNGQVYRCGYCLERFISPKKLKSHTEEDHANDTITHTQRERVVKLDVTTLACKLCGNSINSIQELIEHLKEDHEKKFQTEDVSTLILPFIYDDGLKCAICGINLSNKDSVNWHKLALQKTDLLQQLLKSSNATPVKFDGQVYRCGYCLERFISPKKLKSHTEEDHANDTITHKQREKVVKLDVTNLACKLCGNSINSIQDLIVHLKEDHEKKFQIEDVSTSILPFIYDDGLKCAICGINLSNIDSVNWHKLALQKTDLLQQLLASSNATPVKFNGQFYRCGYCLERFMSPKKLKFHTEEDHANNTITHKQREKVVKLDVTNLTCKLCKNIINSIEDLITHLKDEHDKIFQTEDISTFIIPFIYEDSLKCTVCNLKLSNSRSLVVHMNTHFGNFICDICSASYMIRDGLEAHLKCIHKKERRVTNTKKRGYNRNCKCPHCELVFTRLPALRLHLKEEHGDAKPFACQTCDRTYTKSSHLWSHIKRDHLKERKHKCNFCEKGFFSKDKLTKHLPVHTGEVKYLCDVCPKAFKMQYSLSVHKKTHVNDRRLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00834913;
90% Identity
iTF_00834913;
80% Identity
iTF_00834913;