Hcos021790.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000420.1:6075-13631[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-28 4.5e-24 85.6 14.8 1 70 62 132 62 132 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAGAGTGGTAACCCTCCTCCCTACGGTTGGGGAAACGGGCATACCCTGCAGCCTCCGCCAGCAGCACCTCCTAGCTACTCGCAGGCTATTGGCGGCGTTGGCCCTTCGAGCCCCTACACACCGCAGTATCCTCCTTCTGCTGGGCCTCCCATCGTAACAACAGTGGTTCCAGTAGGACCTCACCCGACACACATGATATGTCCGAGTTGTCATGCTGAAATTGACACAGCTACACAAACGAAACCTGGACTTATAGCTTATATTTCAGGagctattatatttctattggGATGTTTCTGTGGATGCTGCCTCATCCCGTGCTGTATAGACAGCTGCATGGACGTGCATCACAAATGCCCCCACTGCGGCGCTTACCTGGGACGATACCGCCGATGA
- Protein Sequence
- MEKSGNPPPYGWGNGHTLQPPPAAPPSYSQAIGGVGPSSPYTPQYPPSAGPPIVTTVVPVGPHPTHMICPSCHAEIDTATQTKPGLIAYISGAIIFLLGCFCGCCLIPCCIDSCMDVHHKCPHCGAYLGRYRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00448685;
- 90% Identity
- iTF_01334433; iTF_00197794; iTF_01176611; iTF_01495460; iTF_00181003; iTF_01496203; iTF_00250132; iTF_01494743; iTF_01497051; iTF_01116124; iTF_00840672; iTF_00820610; iTF_01430434; iTF_00428675; iTF_01359395; iTF_00788198; iTF_00468649; iTF_01010954; iTF_00827659; iTF_00819728; iTF_00429566; iTF_00467871; iTF_00341888; iTF_01282978; iTF_01504395; iTF_00648782; iTF_00123011; iTF_00124844; iTF_00123896; iTF_00961507; iTF_01072116; iTF_00357092; iTF_01095524; iTF_01093704; iTF_01094573; iTF_00018689; iTF_01077144; iTF_00623681; iTF_00906721; iTF_01117922; iTF_00758826; iTF_00668107; iTF_01440651; iTF_00039436; iTF_00374830; iTF_00148143; iTF_00038354; iTF_00925399; iTF_01526682; iTF_00037439; iTF_01119904; iTF_01527936; iTF_00274114; iTF_00810664; iTF_01488209; iTF_00809722; iTF_00274911; iTF_01030787; iTF_00301764; iTF_01027914; iTF_00040459; iTF_01031629; iTF_01028880; iTF_01029810; iTF_00172405; iTF_01118902; iTF_00302714; iTF_00888861; iTF_00044127; iTF_00001670; iTF_00238378; iTF_00746380; iTF_00449789; iTF_00795366; iTF_00726988; iTF_00121064; iTF_00784872; iTF_00785695; iTF_00784064; iTF_00953192; iTF_00933259; iTF_00283009; iTF_00281943; iTF_00932096; iTF_01247726; iTF_00908464; iTF_01167280; iTF_00637111; iTF_00638329; iTF_01085969; iTF_00185810; iTF_00177747; iTF_00364574; iTF_01340819; iTF_00186804; iTF_00831794; iTF_01063413; iTF_01065221; iTF_01533605; iTF_01064296; iTF_00712523; iTF_00686000; iTF_01062418; iTF_01532691; iTF_01084800; iTF_00375926; iTF_00173837; iTF_00000855; iTF_00050487; iTF_01342671; iTF_00907543; iTF_00952377; iTF_00772550; iTF_00446778; iTF_01425641; iTF_00447829; iTF_01231226; iTF_00112187; iTF_00426021; iTF_00974300; iTF_01539281; iTF_01222140; iTF_00300829; iTF_00851355; iTF_01339613; iTF_01286092; iTF_00852350; iTF_00724424; iTF_00683850; iTF_01401868; iTF_00807316; iTF_01280973; iTF_01281891; iTF_01503504; iTF_00384242; iTF_00682995; iTF_00008573; iTF_00737146; iTF_00408957; iTF_00860064;
- 80% Identity
- -