Hcos039327.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020001904.1:251430-253802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.5e-06 0.00087 20.8 3.4 1 23 8 31 8 31 0.95 2 21 0.0018 0.19 13.5 0.2 2 23 37 59 36 59 0.95 3 21 3.8e-05 0.0039 18.8 0.3 2 23 68 90 68 90 0.97 4 21 1.1e-06 0.00011 23.6 1.1 2 23 99 121 98 121 0.94 5 21 0.0001 0.01 17.4 2.7 2 23 129 151 129 151 0.95 6 21 4.3e-06 0.00044 21.7 0.7 2 23 160 182 159 182 0.95 7 21 8.6e-06 0.00088 20.8 2.0 1 23 188 211 188 211 0.98 8 21 0.019 1.9 10.3 1.0 1 23 219 242 219 242 0.94 9 21 0.00073 0.075 14.7 0.1 1 23 260 283 260 283 0.98 10 21 0.00017 0.018 16.7 0.4 1 23 310 333 310 333 0.97 11 21 1.5 1.5e+02 4.4 0.7 2 21 341 360 340 361 0.91 12 21 0.0049 0.5 12.1 1.5 2 23 370 392 370 392 0.96 13 21 0.0021 0.21 13.3 5.7 1 23 415 438 415 438 0.97 14 21 0.00017 0.017 16.8 0.8 2 23 445 467 444 467 0.96 15 21 2.3e-05 0.0024 19.5 2.6 2 23 474 496 473 496 0.94 16 21 0.009 0.92 11.3 2.2 1 23 502 525 502 525 0.97 17 21 0.23 24 6.9 7.1 2 23 533 555 533 555 0.95 18 21 3.6e-05 0.0037 18.9 0.1 1 23 562 585 562 585 0.98 19 21 0.025 2.5 9.9 1.9 1 23 592 615 592 615 0.91 20 21 0.021 2.1 10.1 2.7 3 23 630 651 629 651 0.91 21 21 8.7 8.9e+02 1.9 0.8 1 15 701 715 701 718 0.84
Sequence Information
- Coding Sequence
- ATGTATACGAATTTGTTAGATTTCGTTTGCGACTACTGCAGTCGTCCTTTTACAAGGAAATATAATCTTCGAACACATATAGAGAATTGTCATCTAAATTCATTATGTTATTGTGAAATATGCGAGCAAACTTTTGGAAGTCCTGCCGGTTTAAATCTCCATCTGTCCAGAGGCCATAACAGGTATAGTCAACCGTTCCCCGAATGCGACTTATGTGGACGCATTTTCACAAGAAAACAGAACATCATGTCTCATATGATCACTGTACACTTACAAGGCATAGGGCCAGAAATACGATGTAACTTATGCGGTAAAACGTTCACGACAGAGCGGAATCTAAAAAGGCATGTGAATCAGCTACATAATCCTGATGTTCAATACCCTACTTGTGACGACTGTCataaagtttttaaagtaaaacatTCTTTAATATCTCACATACAAGCAACTCATTGTATTTCTAAAAAAGATGCAATAAAATGCGATTTGTGCGATAAAGTGTATactaataatagaaatttgaaaCGACATGTTGAAATGTTTCATGGAGAAAAGGGAGAATTTAGATGTATGATTTGTCCTAAAATTTACACGTCTAATCAGAGCTTAAGAAGGCATACTCGAACAAGACACTACACCGATAGCCAAGACCAATATCAATGCGAATATTGTGATCATATTATAACAGGTAGAGATAACTTAGACAGTCATATATCATTCTTTCATAAAACTGATTATTCAGATTGTAATGAAGACACCAAATTTAAACTAGACGAATTTGTTTGCGAAACTTGTAACAATGCTTACGTCGATGAAGCTATGTTGCGTCAGCATATAAAAACTGATCACGCATTTGAAATTTTCTATGAGTATTGCAAAcaatctttattgaaaaaagTCGAAAAGGAAACTTACAGGAATGTTTTTTATAATTGCGAGTTTTGTAACAATGCTTTTACTAGTGTGTATGAATTGAAAGATCATATGCGGCTCGGCCATGATAAAGAATATTCGTTATCGACATGCAATGTGTGCTTTAACAAGTTTTATAGCAAAGAAACTATGTCGGACCATAAACAGATATGCCTGCCACCTCCAAATGTTAACTCTTGCAGTCACTGCGACAAATTATTCACGGATATATCCAGTTTAGAATTTCATATAAGAATTTTTCACCCCCAAGCTCAGATAGCTGATTCAAATATCACTTCAACAAAAGAGGATATTGATGACAATTCGTATTATAGATGTCAACATTGCGACCGTGTTTATTACAGCGATCGATCGTTAAGACATCATATAAAACTGAAACATACGACTGATGAAGTAGTAGAGTGCCAATTCTGTGGGaaaatatgcaataataaatattacttagcGTCTCATATTAAAATCGTGCATTCAAATGACGATTGGTCCAAATGCGATTACTGTgacaaaaaatttaaatctaAAAGAAATATACGTAGGCATATAGAATATACACATTTGGGAATGCAAAGATACAAGTGTATAGAATGTGAAACTTTGTTTAAAGAAAAGAGGAGTTTACGCAAACATGTCAGAACGAAGCATCCGAATTCTACAATGTTCCCACAATGTCATATTTGCCATAAGAGATTTGAGTCTGCAAAATCTTGTAAGATACATTTAAAGTTATTACATTCTTTTAATATGAACACGTATCCTTGTGATCTATGTTCAGTGTCCTTTAGTAGCAATGAAGCATTGAGAATTCATTTAAATACAAACCATTTAGCCGAAGATGAGATTTATAAATGCGAAGAGTGCAATCTAGTTTTCAAAGGACAAGAAAAGTTTGACCAACATAACGAAGTCTGTCACGTGAATTTAGTTCCGAATATTAAACAGAAAGTGTTACCCAGATGCATTATCTGTATGAAAGATTTTAGTACTAGAAAAACTTTGAAAAGGCATATAAAGAAGTTTCATTGCGAATTTGATGTGGATGAGTTGGCTACTTTTGGTTCGAGGTATAGAACGTTCAATGTCGAATGCGAGGACTGCATTAAAAACTTCCAAGATGATTTTTACTACAATATTTATCAGAAGTTGAAACATTTGCGCGATTcagttatttttaaatgtgaGACTTGCCGTTCGTCGTATAAGTCTTTGGAATATTACATTCAAAGATATAAGTTGAGTAATTTCGATGGGTCGAAGACTAAAATGATATTAAGTGAGTTGTGTACAGCGGAAATGAGTGATGAAGAAGCGAGTTACAGTGGCTTCGGATCGTTACACGAGTATATGGAACCGGAGAGCACTACTAATGACATTAAATTGGAGAATGAAAATGATTTTTCCGTAGATGTACATGATATTAAGATTGAACCTATGTcaccttaa
- Protein Sequence
- MYTNLLDFVCDYCSRPFTRKYNLRTHIENCHLNSLCYCEICEQTFGSPAGLNLHLSRGHNRYSQPFPECDLCGRIFTRKQNIMSHMITVHLQGIGPEIRCNLCGKTFTTERNLKRHVNQLHNPDVQYPTCDDCHKVFKVKHSLISHIQATHCISKKDAIKCDLCDKVYTNNRNLKRHVEMFHGEKGEFRCMICPKIYTSNQSLRRHTRTRHYTDSQDQYQCEYCDHIITGRDNLDSHISFFHKTDYSDCNEDTKFKLDEFVCETCNNAYVDEAMLRQHIKTDHAFEIFYEYCKQSLLKKVEKETYRNVFYNCEFCNNAFTSVYELKDHMRLGHDKEYSLSTCNVCFNKFYSKETMSDHKQICLPPPNVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNITSTKEDIDDNSYYRCQHCDRVYYSDRSLRHHIKLKHTTDEVVECQFCGKICNNKYYLASHIKIVHSNDDWSKCDYCDKKFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTMFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALRIHLNTNHLAEDEIYKCEECNLVFKGQEKFDQHNEVCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHCEFDVDELATFGSRYRTFNVECEDCIKNFQDDFYYNIYQKLKHLRDSVIFKCETCRSSYKSLEYYIQRYKLSNFDGSKTKMILSELCTAEMSDEEASYSGFGSLHEYMEPESTTNDIKLENENDFSVDVHDIKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833303;
- 90% Identity
- iTF_00833303;
- 80% Identity
- iTF_00833303;