Hcos039327.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020001904.1:251430-253802[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0057 8.3 7.8 0.6 18 43 9 31 7 32 0.95 2 20 1.8 2.7e+03 -0.3 0.4 18 43 37 59 34 60 0.71 3 20 0.00055 0.8 11.0 0.0 18 43 68 90 63 91 0.94 4 20 0.00012 0.17 13.2 0.7 17 43 98 121 96 122 0.92 5 20 0.22 3.1e+02 2.7 1.8 18 43 129 151 125 152 0.89 6 20 0.00096 1.4 10.2 2.7 13 43 155 182 150 183 0.87 7 20 0.0011 1.6 10.0 1.1 17 43 188 211 184 212 0.89 8 20 0.056 81 4.6 0.1 18 43 220 242 213 243 0.83 9 20 0.27 3.9e+02 2.4 0.0 18 43 261 283 252 284 0.86 10 20 0.25 3.6e+02 2.5 0.1 16 41 309 331 301 334 0.81 11 20 5.2 7.4e+03 -1.7 0.2 18 29 341 352 338 358 0.78 12 20 0.13 1.9e+02 3.4 0.0 15 44 367 393 363 393 0.84 13 20 0.076 1.1e+02 4.2 3.8 14 43 412 438 406 439 0.85 14 20 0.045 65 4.9 3.8 13 29 440 456 436 468 0.76 15 20 0.01 15 6.9 3.2 16 43 472 496 456 497 0.80 16 20 0.08 1.2e+02 4.1 0.8 17 44 502 526 498 526 0.85 17 20 0.73 1.1e+03 1.0 1.1 18 28 533 543 529 556 0.83 18 20 1.9 2.7e+03 -0.3 0.2 19 43 564 585 559 586 0.74 19 20 0.0004 0.58 11.4 4.2 6 43 615 651 613 652 0.80 20 20 5.3 7.7e+03 -1.7 0.3 12 27 696 711 685 713 0.74
Sequence Information
- Coding Sequence
- ATGTATACGAATTTGTTAGATTTCGTTTGCGACTACTGCAGTCGTCCTTTTACAAGGAAATATAATCTTCGAACACATATAGAGAATTGTCATCTAAATTCATTATGTTATTGTGAAATATGCGAGCAAACTTTTGGAAGTCCTGCCGGTTTAAATCTCCATCTGTCCAGAGGCCATAACAGGTATAGTCAACCGTTCCCCGAATGCGACTTATGTGGACGCATTTTCACAAGAAAACAGAACATCATGTCTCATATGATCACTGTACACTTACAAGGCATAGGGCCAGAAATACGATGTAACTTATGCGGTAAAACGTTCACGACAGAGCGGAATCTAAAAAGGCATGTGAATCAGCTACATAATCCTGATGTTCAATACCCTACTTGTGACGACTGTCataaagtttttaaagtaaaacatTCTTTAATATCTCACATACAAGCAACTCATTGTATTTCTAAAAAAGATGCAATAAAATGCGATTTGTGCGATAAAGTGTATactaataatagaaatttgaaaCGACATGTTGAAATGTTTCATGGAGAAAAGGGAGAATTTAGATGTATGATTTGTCCTAAAATTTACACGTCTAATCAGAGCTTAAGAAGGCATACTCGAACAAGACACTACACCGATAGCCAAGACCAATATCAATGCGAATATTGTGATCATATTATAACAGGTAGAGATAACTTAGACAGTCATATATCATTCTTTCATAAAACTGATTATTCAGATTGTAATGAAGACACCAAATTTAAACTAGACGAATTTGTTTGCGAAACTTGTAACAATGCTTACGTCGATGAAGCTATGTTGCGTCAGCATATAAAAACTGATCACGCATTTGAAATTTTCTATGAGTATTGCAAAcaatctttattgaaaaaagTCGAAAAGGAAACTTACAGGAATGTTTTTTATAATTGCGAGTTTTGTAACAATGCTTTTACTAGTGTGTATGAATTGAAAGATCATATGCGGCTCGGCCATGATAAAGAATATTCGTTATCGACATGCAATGTGTGCTTTAACAAGTTTTATAGCAAAGAAACTATGTCGGACCATAAACAGATATGCCTGCCACCTCCAAATGTTAACTCTTGCAGTCACTGCGACAAATTATTCACGGATATATCCAGTTTAGAATTTCATATAAGAATTTTTCACCCCCAAGCTCAGATAGCTGATTCAAATATCACTTCAACAAAAGAGGATATTGATGACAATTCGTATTATAGATGTCAACATTGCGACCGTGTTTATTACAGCGATCGATCGTTAAGACATCATATAAAACTGAAACATACGACTGATGAAGTAGTAGAGTGCCAATTCTGTGGGaaaatatgcaataataaatattacttagcGTCTCATATTAAAATCGTGCATTCAAATGACGATTGGTCCAAATGCGATTACTGTgacaaaaaatttaaatctaAAAGAAATATACGTAGGCATATAGAATATACACATTTGGGAATGCAAAGATACAAGTGTATAGAATGTGAAACTTTGTTTAAAGAAAAGAGGAGTTTACGCAAACATGTCAGAACGAAGCATCCGAATTCTACAATGTTCCCACAATGTCATATTTGCCATAAGAGATTTGAGTCTGCAAAATCTTGTAAGATACATTTAAAGTTATTACATTCTTTTAATATGAACACGTATCCTTGTGATCTATGTTCAGTGTCCTTTAGTAGCAATGAAGCATTGAGAATTCATTTAAATACAAACCATTTAGCCGAAGATGAGATTTATAAATGCGAAGAGTGCAATCTAGTTTTCAAAGGACAAGAAAAGTTTGACCAACATAACGAAGTCTGTCACGTGAATTTAGTTCCGAATATTAAACAGAAAGTGTTACCCAGATGCATTATCTGTATGAAAGATTTTAGTACTAGAAAAACTTTGAAAAGGCATATAAAGAAGTTTCATTGCGAATTTGATGTGGATGAGTTGGCTACTTTTGGTTCGAGGTATAGAACGTTCAATGTCGAATGCGAGGACTGCATTAAAAACTTCCAAGATGATTTTTACTACAATATTTATCAGAAGTTGAAACATTTGCGCGATTcagttatttttaaatgtgaGACTTGCCGTTCGTCGTATAAGTCTTTGGAATATTACATTCAAAGATATAAGTTGAGTAATTTCGATGGGTCGAAGACTAAAATGATATTAAGTGAGTTGTGTACAGCGGAAATGAGTGATGAAGAAGCGAGTTACAGTGGCTTCGGATCGTTACACGAGTATATGGAACCGGAGAGCACTACTAATGACATTAAATTGGAGAATGAAAATGATTTTTCCGTAGATGTACATGATATTAAGATTGAACCTATGTcaccttaa
- Protein Sequence
- MYTNLLDFVCDYCSRPFTRKYNLRTHIENCHLNSLCYCEICEQTFGSPAGLNLHLSRGHNRYSQPFPECDLCGRIFTRKQNIMSHMITVHLQGIGPEIRCNLCGKTFTTERNLKRHVNQLHNPDVQYPTCDDCHKVFKVKHSLISHIQATHCISKKDAIKCDLCDKVYTNNRNLKRHVEMFHGEKGEFRCMICPKIYTSNQSLRRHTRTRHYTDSQDQYQCEYCDHIITGRDNLDSHISFFHKTDYSDCNEDTKFKLDEFVCETCNNAYVDEAMLRQHIKTDHAFEIFYEYCKQSLLKKVEKETYRNVFYNCEFCNNAFTSVYELKDHMRLGHDKEYSLSTCNVCFNKFYSKETMSDHKQICLPPPNVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNITSTKEDIDDNSYYRCQHCDRVYYSDRSLRHHIKLKHTTDEVVECQFCGKICNNKYYLASHIKIVHSNDDWSKCDYCDKKFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTMFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALRIHLNTNHLAEDEIYKCEECNLVFKGQEKFDQHNEVCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHCEFDVDELATFGSRYRTFNVECEDCIKNFQDDFYYNIYQKLKHLRDSVIFKCETCRSSYKSLEYYIQRYKLSNFDGSKTKMILSELCTAEMSDEEASYSGFGSLHEYMEPESTTNDIKLENENDFSVDVHDIKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833309;
- 90% Identity
- iTF_00833309;
- 80% Identity
- iTF_00833309;