Hcos004987.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000085.1:97446-101663[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.01 1 11.1 0.3 1 23 40 62 40 62 0.98 2 30 0.38 39 6.2 0.0 2 23 90 112 89 112 0.93 3 30 0.00044 0.046 15.4 2.1 2 23 133 155 132 155 0.95 4 30 0.00016 0.017 16.8 1.4 1 23 160 183 160 183 0.95 5 30 0.00071 0.073 14.8 0.3 1 23 187 210 187 210 0.91 6 30 0.37 38 6.2 0.8 2 23 213 235 212 235 0.95 7 30 0.26 27 6.7 0.8 2 20 242 260 241 262 0.90 8 30 0.0001 0.011 17.4 0.5 1 23 312 335 312 335 0.94 9 30 1.8 1.8e+02 4.1 0.2 2 23 364 386 363 386 0.94 10 30 0.8 82 5.2 0.9 1 23 408 431 408 431 0.92 11 30 0.00092 0.095 14.4 0.4 3 23 438 459 436 459 0.93 12 30 0.00025 0.026 16.2 0.0 1 22 464 485 464 487 0.90 13 30 0.0062 0.63 11.8 4.2 2 23 493 515 492 515 0.95 14 30 0.0011 0.11 14.2 4.4 1 23 519 542 519 542 0.97 15 30 0.01 1 11.2 0.3 2 23 549 570 548 570 0.97 16 30 1.8 1.8e+02 4.1 1.1 1 10 576 585 576 589 0.95 17 30 0.018 1.9 10.3 2.3 1 23 630 652 630 652 0.95 18 30 0.055 5.6 8.8 0.0 2 23 680 702 679 702 0.90 19 30 0.019 2 10.3 0.8 1 23 722 745 722 745 0.97 20 30 0.00022 0.022 16.4 0.2 1 23 750 773 750 773 0.96 21 30 0.0001 0.01 17.4 1.8 1 23 778 801 778 801 0.97 22 30 3.3e-05 0.0033 19.0 0.5 2 23 804 826 804 826 0.97 23 30 0.0048 0.49 12.2 0.9 1 23 907 930 907 930 0.93 24 30 9.6 9.8e+02 1.8 0.0 2 23 1003 1026 1002 1026 0.91 25 30 0.00023 0.024 16.3 1.6 3 23 1033 1054 1032 1054 0.94 26 30 0.0022 0.23 13.2 3.2 2 23 1059 1081 1058 1081 0.94 27 30 0.00084 0.086 14.5 1.7 1 23 1086 1109 1086 1109 0.97 28 30 2.9e-05 0.003 19.1 4.7 1 23 1113 1136 1113 1136 0.97 29 30 0.0013 0.13 14.0 0.5 3 23 1144 1164 1143 1164 0.97 30 30 0.00014 0.014 17.0 0.8 1 23 1170 1192 1170 1192 0.97
Sequence Information
- Coding Sequence
- ATGACAAAATATGAAAATGGGCCGGCAAAGGTACTGAATGGTAACAAACACAGGAGGCGCAATCTACTAACGTTGTTCAACAACACGTCTATGATACCGTTTAAATGGCGCGGAAAGTACATGTGCTTTTACTGCGGCGAAGATATTGCACAGTACGAAGAATTGAGGGACCATACGAAGTCTCACGGACTCTGCTCAGACAAAGATCGAGCATTGAGGCTAGTCAGATCTCGCGATGACGAAGTCAAGATTGATGTTTCTGATATAAGATGTGAAGTTTGCACGGAACCTTTTGAATCCTTCTATGAAGTAGTCGATCATTTAGCAATAAAACATAGCCTTCCATTCAATAAAGACGTAGATCTATCCATATCACCATATAGGCTCGTAGATTTAAAGTGTCTTCATTGTGATGAAGTGTTCAAACATCTAAGTAAACTTATCATCCACGTCAATATTAAACACCCTGTCAATTGTTTCCTATGTCCAGAATGTAGtcaaaagtttaataaaaaaagagaccTAGAATCTCATTTGCGATCTTATCACAAAAAAGAATACAGATGCACAATATGTACCCGAAACTTTCCTACAGTGGCAGCTCTGAAAAAACACAGAGGACAAGCTCACGCATCTACTTGCAACATTTGTTTTGCCACTTTCCCATCAGATAACAAAAGATTAAAACATATGAAACTAGAACATATATCTGACAGCGAGCTACATTGTAGATTTTGCGgcaaaacattaagtactaaaATTGCATTTCTTAATCACGCATCGAAATGCAGCATTAGGCCTGACATAATTTTAGATGATTGTATAGCTGTAGATGATATCGAAAAGAAACCTTCCGTACATCAAATTAGGACTAATATTGCGTGCATCTTAAATATGTCGACTGCCATACcgtttaaatatttcttgaatAGATTCAGATGCTTCTACTGTCCtaaagattttgatgattctGATGATCTCAAGCAACATACTGTCGTAGAACACCCGCATTGTGACATCAAACTCCGTGGCATGAGACTTAGAAATCGAGACGATGGTATTAAAGTCAAAGTGGATATAACTGCTCTCTCCTGTAAAATGTGTTTTGAATCTATGCAAAATTTAGAAACATTAATAGATCACTTGATTACTGAACACAAAGTGGACTATAATAAGTCGGTTGATAATAATTTGGAACCCTACAGACTAATCAAAGAGAATTTCTCGTGTCCTTTTTGTCCAGAAGTATGTAGATACTTTGGCATATTATTGAAACATGTCAGTAAGATTCATGctgataacaaaattatttgcgTTTACTGTGGGCAGTCGTTCAGGACTGATCCAAGTCTTCGGGCACATATATCACATCGTCACAAGCCTAGCGGCTACAAATGTCCCGTTTGCGATCTAGAATTTACTACAAGTGATGCTTTATTAGTCCATAGTGGTAGTGCACACGGTAGCAAGATATCAAAATGTCCAGAATGTTCCGAAAAATTCACTTCTCATCACCGTATGAGAAGACATATGATAAACGTTCACGGGTCAGGTCATAAGTGCACTTACTGTGGGAAGCTTTTTACAAAGAATTCGTTTATGGTGAACCACGTGCGGAGGACTCACTTAAAGGAGAAGAACGTTCAGTGTTCAATCTGTTTTGAGAAATTCTTCGATCTGCCGCTTTTGAAAATGCACATGGTTAAACATATCGGGGAGAGAAACTTCCATTGTGATGTTTGCGGCAAGAAATTCTTATGGAAGAAAAACCTTAGAGATGAATACCTGCCAGGCCCTTACGAAGGCTGCAACTCTGAGCGCAGgaggaaaaatttgaaaattctgTTCAACAACACAACAGTACTGCCATTCAAATGGCGGGGCAagtttttgtgtttctactgCGCCAAAAGTTATACCGAATATGCTGAGTTTAAAAAGCATACGAAATCTCACGGACAATGCACTACGAAAGATTATTCACTTAGAATCATCAAAGGCAAtcatattgaaattaaaattgacGTGTCAGAGATTACATGCGAAATTTGTAATGAACCATTTAGTGATTTCTACGAAATAGTGGATCATCTAATTGGCAAACATAATTTAGAATATGACAAAACTATAGATATTCCTTATCAGGCGTACCGTCTTGTAGACTTCAGATGTCTTTTCTGCGAACAACAGTTTTCTTACTTTGGATATTTGATCAATCATGTGAACGTCATgcatccacaaaacaattttatcTGCGATGATTGCGGAGCTACGTTTAATAAGAAAAGAGACATGGCTGTTCATTTAAGGAATCTACATCGTCAGGGCGGCTACCCTTGTGAGCAGTGTACGAAGAATTTTGAAACTTATTACTCCTTGCGTACTCATCAAAACAGCTCGCATTTCAGGCAATGCAAAAACTGTGGATTGAGATTCGTTTCCTTAACCCTTTTACAAAAACATATACGCATAGACCATCCGGACGATGGGGGGCTAAAATGTTCGTTTTGTGCCCAAAAATGTCATTCTCGACATGGTTTAACGCAACATATTAGTAAATGTAAAGTTAAATTATTAACGCAGTTGCATAGGCCCGATGCTTGTACAGCAGACTCTGGAATCGAACCTAAAAAGAAACAGAACATTTTACAGATTAGACAAAACATACAGTGCGTTCTGAACATGTCTACAGCGGTACCATTTAAATTCTTCTCCAAGTATTCTTGCTTTTATTGTTCTAAAAAGTTTGTTGAATTCGATGAGTTGAGGATACACACGGAGTTAGAACATCCAATATGCGATCTGAAATCGAAAGCGATGCGGAAATGCAAAGGCGAAAGGGTTAGCGTCAAGATAGACATAGCATCTTTGTCCTGTAAAATATGCTGTCAGACTATGACTGAATTCGACTTACTGATAGATCATTTAATATTAGAACATAAGGCGAATTACGATAAAACACTCACCGGTTGCTTAGAGCCCTATAAGATTATAAAAGATAACATGCCCTGTCCATTGTGTCCCGACCGTGTATTTAGATACTTCGGGATTTTACTAAGGCACGTGAATTCCGAACACAGTAACAATAATAGAATATGTGATTTCTGCGGCCGTTGCTTTCGAAACGTCACTAATCTGAACGTTCACATATCTTACACGCACACAGGTTCTTGTGAGTGTAATATTTGCGGGATAAAATATAAGAATCAGTGGTGTTTAGCTCGTCATAGAGCTAAATCTCACAACGCGAAAGATTACAAATGTCCAAAGTGCCCAGAATTGTTCCCTTCGCAGTATCACAAGCAGAAACATTTGATAAAAGTGCACGATATAGGtcataaatgtaatttttgcgGTAAAATGTTCACAAGGAATTCTTTTATGAATGATCATATAAGGAGGACGCATTTGAGGGAGAAAAATGTTGCTTGCTCAATTTGTAGTGAGAGGTTCTTCGATAATTACTTGTTGAAGATGCATATGGTGAAGCATGAGGGGCAGAGAAAGTTTAGTTGCGATGTGTGTGGTAAGGATTTCCTCCGTCGAAGCAATCTGCAGTCCCATAAAGAAATGCATAAGAAGTATGGACATATATCGTTGCAAGTTTAA
- Protein Sequence
- MTKYENGPAKVLNGNKHRRRNLLTLFNNTSMIPFKWRGKYMCFYCGEDIAQYEELRDHTKSHGLCSDKDRALRLVRSRDDEVKIDVSDIRCEVCTEPFESFYEVVDHLAIKHSLPFNKDVDLSISPYRLVDLKCLHCDEVFKHLSKLIIHVNIKHPVNCFLCPECSQKFNKKRDLESHLRSYHKKEYRCTICTRNFPTVAALKKHRGQAHASTCNICFATFPSDNKRLKHMKLEHISDSELHCRFCGKTLSTKIAFLNHASKCSIRPDIILDDCIAVDDIEKKPSVHQIRTNIACILNMSTAIPFKYFLNRFRCFYCPKDFDDSDDLKQHTVVEHPHCDIKLRGMRLRNRDDGIKVKVDITALSCKMCFESMQNLETLIDHLITEHKVDYNKSVDNNLEPYRLIKENFSCPFCPEVCRYFGILLKHVSKIHADNKIICVYCGQSFRTDPSLRAHISHRHKPSGYKCPVCDLEFTTSDALLVHSGSAHGSKISKCPECSEKFTSHHRMRRHMINVHGSGHKCTYCGKLFTKNSFMVNHVRRTHLKEKNVQCSICFEKFFDLPLLKMHMVKHIGERNFHCDVCGKKFLWKKNLRDEYLPGPYEGCNSERRRKNLKILFNNTTVLPFKWRGKFLCFYCAKSYTEYAEFKKHTKSHGQCTTKDYSLRIIKGNHIEIKIDVSEITCEICNEPFSDFYEIVDHLIGKHNLEYDKTIDIPYQAYRLVDFRCLFCEQQFSYFGYLINHVNVMHPQNNFICDDCGATFNKKRDMAVHLRNLHRQGGYPCEQCTKNFETYYSLRTHQNSSHFRQCKNCGLRFVSLTLLQKHIRIDHPDDGGLKCSFCAQKCHSRHGLTQHISKCKVKLLTQLHRPDACTADSGIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRIHTELEHPICDLKSKAMRKCKGERVSVKIDIASLSCKICCQTMTEFDLLIDHLILEHKANYDKTLTGCLEPYKIIKDNMPCPLCPDRVFRYFGILLRHVNSEHSNNNRICDFCGRCFRNVTNLNVHISYTHTGSCECNICGIKYKNQWCLARHRAKSHNAKDYKCPKCPELFPSQYHKQKHLIKVHDIGHKCNFCGKMFTRNSFMNDHIRRTHLREKNVACSICSERFFDNYLLKMHMVKHEGQRKFSCDVCGKDFLRRSNLQSHKEMHKKYGHISLQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00648358;
- 90% Identity
- -
- 80% Identity
- -