Efla006601.1
Basic Information
- Insect
- Endotricha flammealis
- Gene Symbol
- -
- Assembly
- GCA_905163395.1
- Location
- LR990881.1:3931417-3935968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.082 6.9 8.2 0.2 1 23 57 79 57 79 0.98 2 29 4.3 3.7e+02 2.8 0.0 2 23 107 129 106 129 0.87 3 29 0.01 0.87 11.1 2.6 2 23 150 172 149 172 0.94 4 29 0.0022 0.19 13.2 2.2 1 23 177 200 177 200 0.94 5 29 0.005 0.43 12.0 0.5 1 23 204 227 204 227 0.96 6 29 2.5 2.1e+02 3.5 0.3 2 23 230 252 229 252 0.94 7 29 0.089 7.5 8.1 0.6 2 20 259 277 258 279 0.91 8 29 0.00016 0.014 16.7 0.4 1 23 330 353 330 353 0.93 9 29 0.3 25 6.4 0.1 2 23 382 404 381 404 0.94 10 29 0.0033 0.28 12.6 1.2 1 23 426 449 426 449 0.96 11 29 0.0026 0.22 12.9 0.4 3 23 456 477 454 477 0.92 12 29 0.0037 0.32 12.4 0.0 1 22 482 503 482 505 0.89 13 29 0.69 58 5.3 3.5 2 23 511 533 511 533 0.94 14 29 0.001 0.086 14.2 4.4 1 23 537 560 537 560 0.97 15 29 0.023 1.9 10.0 0.2 2 23 567 588 566 588 0.97 16 29 0.086 7.3 8.1 2.5 1 23 627 649 627 649 0.95 17 29 0.36 31 6.2 0.0 3 23 678 699 677 699 0.91 18 29 0.0089 0.76 11.2 0.8 1 23 719 742 719 742 0.97 19 29 0.00036 0.03 15.6 0.2 1 23 747 770 747 770 0.96 20 29 0.006 0.51 11.8 0.7 1 23 775 798 775 798 0.97 21 29 0.00082 0.069 14.5 0.5 2 23 801 823 801 823 0.96 22 29 0.0041 0.34 12.3 1.3 1 23 903 926 903 926 0.96 23 29 2.3 1.9e+02 3.7 0.0 2 23 999 1022 998 1022 0.91 24 29 6.3e-05 0.0053 18.0 1.2 3 23 1029 1050 1028 1050 0.94 25 29 0.0036 0.31 12.5 3.2 2 23 1055 1077 1054 1077 0.94 26 29 0.016 1.4 10.4 3.2 1 23 1082 1105 1082 1105 0.97 27 29 1.8e-05 0.0015 19.8 4.9 1 23 1109 1132 1109 1132 0.97 28 29 0.00073 0.062 14.7 0.3 2 23 1139 1160 1138 1160 0.96 29 29 3.3e-05 0.0028 18.9 1.1 1 23 1166 1188 1166 1188 0.98
Sequence Information
- Coding Sequence
- ATGGTGCATTTGTTTAGTAGAATCGGGCCCCAGACGTCTTGGATCGCCTGGTGTGGTTTCGATGAAAATGGGCCGGCTAAGATACTGAATGGTAACAAAAACAGGAGGCGGAATCTTCTAACGTTATTCAACAACACATCTATGATACCTTTCAAATGGAGGGGGAAGTACATGTGTTTTTACTGTGGTGAAGACATCGAACTATATGAAGATTTGATAAAGCATACTAAATCGCACGGTTTTTGTACAGATCAAGATCGAGCGTTAAGACTAGTCAGGTCGCGTGATGACGAAATCAAAATAGATGTATCTGATATTACTTGTAGCCTATGTACAGAACCTTTTAATGTTTTTGATGAAATAGTCGATCATTTAGTTATAAAACACAGTCTCCCATACAACAAGGATGTAGGTCTTTATATATCACCATATAGACTTGTTGATTTGAAATGTCTTCATTGTGAAGAGGGTTTTAAACATTTAAGCAAATTAATTATTCATGTTAATAATAAACATCCGATCAATTGTTTCCTTTGCGCGAAATGTAGCCAAAAGTTCAATAAAAAAAGAGATCTGGAGTCTCATTTAAGATCTTATCATAAAAAAGAGTATAAATGCTCTATATGCAAGCTTAGTTTTGCAACGGTTGCCGCTCAAAAGAAGCACAGGGCTAGTTCACACCCGTCCTCATGTAATATCTGTTTAGAAATATTCCCCTCGGACAATAAAAGACTTTTGCACATGAAATCGGAACATTTGGCAGACGGCGCGTTACAATGCCGCTTCTGTTTAAAATCTTTTAGCACTAAAATAGCATTTCTCAATCACGCATCGAAATGTAGCGTGAAAACGGATACATTTTTCGATGAATGTATCAATGTAGATGATAAGGAAGAGAAGAAACCAACAGTACATCAAATTAGAATGAACATAGCGTGTATTTTAAACATGTCAACGGCTGTACCGTTTAAATATTTCAAAAACAGATTTCGGTGTTTCTATTGTCCAAAAGATTTTGATGATTCAGAAGATCTTAAACAACATACGGTTATTGAGCATCCTCATTGTGATACCAAGCTTCAGGGTATGAGGCTCAGAAACAGAGATGATGGCATCAAAGTTAAAGTGGATATAGCGTCCCTATCATGTAAAATATGCTTCGAATCTATTCAAGATCTAACATCGTTAATAAATCATTTAATATCTGAACATAAAGTTGAGTATGATAAAACTGTGGACAATAATATGGAGCCCTTTAGATTGATTAAGGATAATTTCGCTTGTCCCTTTTGCACGGAAGTGTGTAGGTATTTTGGGAATCTACTAAAACATATAAGCAGGATACACGCTGATAATAGAATTATATGTGTTTACTGCGGGCAGTCGTTTAGGACAGATCCAAGTCTCCGCGCTCATGTATCTCATCGGCATAAGCCTAGTGGGTACAAATGCACGATTTGCGAATTACAGTTTCCTACCAGTGATGCTTTACTAGTGCACGGTGGTAGCGCACACGGTACCAAGATCGCTAAATGTCGTGAATGTTCAGAAGAATTTATATCGCATCATCGTATGAGGAGACATCTCATAAACGCTCATGGTACAGGCCATAAATGTACGTACTGCGGAAAACTGTTTACAAAGAATTCGTTTATGGTGAACCATGTGCGACGTACGCACTTGAAGGAGAAGAATGTACAGTGTTCAATATGTTTAGAGAAATTCTTTGATCTGCCACTCTTGAAGATGCATATGGTGAAACATGTGGATGAATATGCGGCAGGTCCATACGATGGCTGCAACTCCGAACGAAGGAGGAAAAACTTGAGAATATTATTCAACAACACAACGATACTGCCTTTCAAATGGCGCGGCAAGTTCTTGTGTTTCTTCTGCGCAAAAAGCTATACAGAATATGCGGAATTCAAAAAGCATACAAAATCACACGGACCGTGCACAACGAAAGATTACTCATTGAAAATCATAAAAGGCAATCATATTGAAATCAAAATTGATGTTTCAGAAATTCTATGTGAGATTTGTAATGAGCCTTTTAATGATTTCGACGAAATAGTTGATCATCTAATTGGTAAACATAACTTGGAATATGACAAAAGTGTAGACATACCATACCAAACATACAGACTTATAGATTTTCGTTGTCTATTTTGCGATCAGCAGTTTTCATATTTTGGATATTTGGTTAATCATGTCAACGTTATGCATCCACAGAATAATTTTATATGTGATGATTGTGGCGCTACGTTTAATAAGAAAAGGGATATGGCGTTACATTTGAGAAACTTACATCGGAAAGGTGGTTATCCATGTGATCAATGTGTCATGAATTTTGATACTTACTACTCGCTACGTACGCATAAAAATAGCGCTCACTTCAGGAAATGTAGGAACTGTGGTTCGCGGTTTGTTTCATTGGCATTATTGCAGAAACATATTAGGTTAGAGCATCCAGATAATGGTGATTTGAAATGCAGTTTCTGTGCTCAAGAATGTCATTCCCGTCAAGGATTAACACAACATTTGAGTAAATGTAAAGTGAAATTACTTACACAGTTAGATCGGGCAGATTCTTATCCAGATACTGGAGTGGAACCCAAAAAGAAACAAAACGTACTACAAATGAGATTAAACATACAATGCGTTTTGAATATGTCCACGGCAATACCCTTTAAATTCTTTTCAAAGTACTCATGCTTTTATTGTTCGAAAAAATATTCGGAGTTTGACGAATTGAAAGATCACACGTTAGTAGAACACCCGATATGCGATCTCAAATCTGAATCGATGAGGAAATGCAAAGGAGAAAGAGTCAGTGTCAAAATTGATATAGCATCGTTAGTATGTAAAATTTGCTGCCAACCTATGCCTGAATTCGATGATTTAATTGATCACCTAATATTAGAACATAAAGCGAATTATGATACGTCACTAACTGGCTGCCTAGAGCCATTTAGGATTATAAAAGAGAACATACCCTGCCCTTTATGTCCTGAACGTGTTTTTAGATATTTCGGTATATTGTTAAGGCATATGAACTTGGAGCATAGTAATAATAACAGGATATGCGATTTCTGCGGCCGATGTTTCCGTAATGGATCTAATTTGAAAGTACATATATCTTATGCTCATACAGGTTCTTGTAAATGCGACATCTGTGGGTTAGAATATAAAAATCAATGGTGTCTAGCGCGCCATAGAGCCAAAACTCATAACGCTAAAGAATACAAGTGCAGCAAATGTCCAGAATTGTTCCAATCGCAATATCATAAGCAAAAACATCTAATAAAAGCACATGATATTGGACATAAGTGTAGTTATTGCGGTAGAATGTTTACAAGGAATTCGTTTATGAAAGACCATATTAGAAGAACTCACTTGAGAGAGAAAAACGTGCCGTGCACGATATGCAGTGAGAAGTTCTTCGATAATTATTTATTGAGAATGCATATGGTCAAACATGAGGGACAGAGGAGGTTCAAATGTGACATTTGTGGGAAAGATTTTCTGAGGAGAAGTAATTTGCAGTCACATAAAGAGATGCATAAGAAATATGGACATGTTACTTTGTCTTCGTAG
- Protein Sequence
- MVHLFSRIGPQTSWIAWCGFDENGPAKILNGNKNRRRNLLTLFNNTSMIPFKWRGKYMCFYCGEDIELYEDLIKHTKSHGFCTDQDRALRLVRSRDDEIKIDVSDITCSLCTEPFNVFDEIVDHLVIKHSLPYNKDVGLYISPYRLVDLKCLHCEEGFKHLSKLIIHVNNKHPINCFLCAKCSQKFNKKRDLESHLRSYHKKEYKCSICKLSFATVAAQKKHRASSHPSSCNICLEIFPSDNKRLLHMKSEHLADGALQCRFCLKSFSTKIAFLNHASKCSVKTDTFFDECINVDDKEEKKPTVHQIRMNIACILNMSTAVPFKYFKNRFRCFYCPKDFDDSEDLKQHTVIEHPHCDTKLQGMRLRNRDDGIKVKVDIASLSCKICFESIQDLTSLINHLISEHKVEYDKTVDNNMEPFRLIKDNFACPFCTEVCRYFGNLLKHISRIHADNRIICVYCGQSFRTDPSLRAHVSHRHKPSGYKCTICELQFPTSDALLVHGGSAHGTKIAKCRECSEEFISHHRMRRHLINAHGTGHKCTYCGKLFTKNSFMVNHVRRTHLKEKNVQCSICLEKFFDLPLLKMHMVKHVDEYAAGPYDGCNSERRRKNLRILFNNTTILPFKWRGKFLCFFCAKSYTEYAEFKKHTKSHGPCTTKDYSLKIIKGNHIEIKIDVSEILCEICNEPFNDFDEIVDHLIGKHNLEYDKSVDIPYQTYRLIDFRCLFCDQQFSYFGYLVNHVNVMHPQNNFICDDCGATFNKKRDMALHLRNLHRKGGYPCDQCVMNFDTYYSLRTHKNSAHFRKCRNCGSRFVSLALLQKHIRLEHPDNGDLKCSFCAQECHSRQGLTQHLSKCKVKLLTQLDRADSYPDTGVEPKKKQNVLQMRLNIQCVLNMSTAIPFKFFSKYSCFYCSKKYSEFDELKDHTLVEHPICDLKSESMRKCKGERVSVKIDIASLVCKICCQPMPEFDDLIDHLILEHKANYDTSLTGCLEPFRIIKENIPCPLCPERVFRYFGILLRHMNLEHSNNNRICDFCGRCFRNGSNLKVHISYAHTGSCKCDICGLEYKNQWCLARHRAKTHNAKEYKCSKCPELFQSQYHKQKHLIKAHDIGHKCSYCGRMFTRNSFMKDHIRRTHLREKNVPCTICSEKFFDNYLLRMHMVKHEGQRRFKCDICGKDFLRRSNLQSHKEMHKKYGHVTLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833307;
- 90% Identity
- -
- 80% Identity
- -