Hcos022491.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- egg
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000438.1:331733-377551[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5 1.3e+04 -2.9 0.0 50 66 369 385 368 387 0.84 2 3 2.5 2.1e+04 -3.6 0.1 29 38 934 943 909 944 0.85 3 3 7.2e-15 6.2e-11 43.0 0.0 4 75 975 1039 972 1041 0.90
Sequence Information
- Coding Sequence
- ATGTCGTTATTTCAAACTCCGCCGCCGCGTGGTATTCAAACGCGCGCACAGTTTAAAAAGGAGTTAACGGCTAACGAGGAGGTTAAAAACTTGGAAGTGAAGTCGGATGTGCAGTTCGATCGATTGGATGCAGTGAAAGAATCTGGAAAAGTGAAATCGGATATAGTTTTAACGTACGCCACCGGGTCGCGACAAGATGGCGGCGAGCACAAATGTACCAGTACGCGCGCCTCTTCGTCTAGCACGCGCCAGAAACGACTAGAATACGAAGCAGCTCAAGCCAAAGCATTGATTGATCTGGATTTAGCTAAAAAGAAAGCCGAAATAGATTTAGCTAATAAGAAAGCTGAAATAGAGAAGGAATTGCTCGAGAAAAAGCTGGCTATAGATTTAGCAGACCTGGACTCACACTCGAAATGTTCCAGACGCTCGTCTATCGCCTCCTACCAAAATAAAGTGGAAACCTGGTTAGAAAGGTCTGTTGCTGCCCCTGGATCATCACTCAACTGTGCCATAAACAGTGGTGACAAACTGGAACAACGTCCCAGTACCACGGCAGCCGATATGGGTACCTGCCATGCAATTGCGGAGTTATCAAACACAATCAAGAATGCTGATAGCGCTGCTGCCTCCAACGGTAATAACCAGCAGCTGTTGTCAAGGCTAGCTACCTCTAAAGATCTGCCATTATACTTTGGAGACCCCATGGAGTGGTTACAACTAAAGGAAGCATTTTATGAGTCCACACGCCTTTGTAAGTACAGTGAACAAGAAAATCTGTGGCGCCTGCGAAAATGCCTACGAGGCGAGGCAAAAGAAGCCGTATCTTCCTTACTAATGAGTGCCACTTCACCTCAGGAAATAATGGAAACCTTAGAGCTGCGATTCGGCAGGCCTGAAAATATTGTGCGAAGAGTAACTTCACAACTGAAAAAGTTACAGCCATTGCCACAAGCTTACACAACTGAAATAGTGAACTTTGcaattaaacttaaaaattacataacaactatacggaacatacaacAGAAGGACTATCTAAGAAGTCCTGAGCtaattactataattatatCAAAGTTACCCACAGCATTGATCAACTTGTGGGCTAACTATCTACATGATAACCGAGACAGCGACATGCCAAAGCTGGAATTACTATCACGATTTCTTCATGCAGAAGCCAAGAAGGTAGCAGAGTCAGGATTGAGCTATGTGTATGCGAGTGATAGTAAAAGAAATCCGACAGAGCATGTACAGAGAAATGCAAACAAGCAGTCTGTATTCGCTTGTACAGCAGCTGAAAGCGTGACACCCAAGTGCAACTTCTGCAAGAGATACAGTCACAAACTGACAGAGTGCAGCAGATTCAAACGAGCTCTGCGCAAAGACAAATGGAGATACGTGAGAGTAAATAACCTATGTTACAAATGCTTAGGAGCACGACATACAGACATATCTTTGTGTACTGCGGAATGCTGCGACGTGGAGGCCTGTGGTGGGCCCCACCATCGTTTACTGCATTGGATGAAGCCACAAACAGTGAGTCAAGACCAGCAGTGTGACACCGATGTGGTTGCCCACGCGATCACGTCTGGACAGTCCCAAGTGCCAGTGTTAAGCGTTACAAAAAATTTAGAATCAAAATTAGTGATGTTAAAAATAGTGCCGATAACCATTCACGGACCCAAACAAAGTGTCGATACGTATGGTTTGCTGGATGATGGGGCAACTGTGAGCCTCATCTCTGCGGACATTGCAGACCAGGCAGGTCTGTACGGTAAGAGCCTCACTATGCGCGCCTCCAGTGCATGGGACTCAGCTGAATTGAAAGATATATCAGTGGTGAAGCTATCGATGGAGGTGGCTCCCTCGGACCTCCCCCCCAAAGGGGAGATCTCCCGCCCCCCACTCCGGGTGGGCATGTCGGTGTACGCAATGAGGAATACATTCTGCTCCTGGCTGAAGGTCAAGATCACGGAAGTACATCCGAAGGGTAATAacGCCACGGTCCCGTTCACGATGTGCCGGGTCAAGTTCGACCGGGTCAAAGTGAACCCTCGCGTTCTTCCCGCTAGATGTCTCGCCTACGCCGAGCCCGCTGACGTCAGGCTTACCATCGGTACCCGTGTGATAGCGCTGTTCAGAGAGTCTACAACCGATGGCAGCCAACCGAAAGAGTCGTTTTACTCTGGCATCGTCTCCGAAATACCCAACCCTGTCAACAAATTCAGgtattTAATATTCTTCGACGACGGCTACGCGCAATACGTGAAGCACTGTGACACTCGGGTGGTATGCGAGAGTGCCGCCTTAGTCTGGGAGGAGGTGCATCCCTTCTCCCGAGACTTCgtgaggaagtacctccttaCGTATCCCGAGAGACCAATGGTCCGGCTACATGCTGGACAGAGTCTTAAGACAGAATGGAATGGCAAATGGTGGGTGTCCAAAGTGATACAAGTGGACGCGTCGCTCGTGCAAGTGCATTTCGAAGAAGACAACCGGACCGAATGGATATACCGAGGGTCGACGAGACTGGCGCCTCTGTTCTTGGAGCTGCAGGCCGCTGAGAGGCAGCGGTCGAGGCCTATGCCCAGGAGCAACCAGCGACGGATGAACATGCCGTATGTTGAGTACACCCGGTCGGATGAGCAAGGGAAGGATAGTACACCACAGACGGCGCAGGCGCAGCAACAACACAATGAGGAGCTGCGGCGCCAGCGCGCGGTGGCCAAGAAGTCGACGGTCCCGCCGCTGCAccagccgccgccgccgccggccggcGCCAACCTCGACAGCGTCACCAGCAGGGTCGTGTACTACACGCCCAAGAACGCAGTGAAGCCGTACAAGATGGTGAAACACACGTGCAGTCCGCAGTGCAAGAGGAGCGACGTGCTGGCTCTGAAGGACCTGAGGACTTACAACCCCCTCGCGAAACCACTGCTCAGCGGATGGGAGAGGCAAGTGGTCCGCTTCAAGGGGCACAAGGAGGTGATGTACCGCGCGCCGTGCGGCCGGCGCCTGCGCAGCGTGCGCGAGCTGCACCGCTACCTGCAGGCCGTGCGCTCCGACATGCCCGTCGACCTGTTCGACTTCCACCCCGGCACGCACTGCCTGGCCGAGTTCGTGCTCAACAAGTGCCTCGTGGGCAAGAAGGATCTTTCCCACGGGAAGGAGAACGTGCCGGTGCCCTGCGTGAACTACTACGACGACTCGCTGCCCGAGTTCTGTTCGTACAACACGGAGCGCACGCCCACGGCCGGCGTGCCGCTCAACATCGACCCGGACTTCCTCTGCGGCTGCGACTGTGAGGATGACTGCGAGGACAAATCGAAGTGCGCTTGCTGGCAAATGACGCTAGAGGGCGCTCGAACAATCGGCCTTGACGACTCAAACGTCGGCTACGAGTACAAACGACTGCCCGAGCCGTTGCCGTCAGGCATATACGAATGCAACTCTAGgTGTAAATGCAGGCAAACTTGTCTCAACCGAGTGGCACAGCATCCTTTGCAGTTAAAATTACAAGTGTTCAAGACATACAACCGAGGCTGGGGCATCCGCGCACTGAACGACGTGCCGAAAGGCTCCTTCCTGTGCGTGTATGCGGGCAACCTTCTCACCGACGCTACCGCCAACCTGgaTGGTCTAAACGAAGGCGACGAATACCTCGCCGAGTTGGACTACATAGAAGTGGTGGAGCAGATGAAGGAGGGATACGAAGAAGACATCCCTGATGCTGACAAGAAGCTAGATAAGaTGGGTCAAAACAAATCCTCCGAAGAAGACGAGTCTAGTaccgaagaagaagaagacaataCCCACGACGACAAAACTGATGACGACTTCCGGCCAGGATTCATTGGAATGGGCCTCACTGACTTCGATAAACGTCTACGGAAAAGAGAAAAGAAGGAGAGAAAAATTAAGGCTGCGAAGGACAAACGGAAGGAAGGTGATGAGAAGAAGGACTCTGTGGATGAAGACGGTTGCATCACCATCAGCGATGATGAAGAAGTTCGAGAACCGTCAAGTTTTATGGCGCAAACCAGAATGGACGCCAATTACGTATCGAAATATAGGTCTGTCCGTTCGTACTTCGGCAAGGACGAGGCGTGTTATATTATGGACGCTAAGGTTCAAGGCAACATCGGCAGATATCTCAATcATTCCTGTACACCGAACGTGTTTGTACAAAACGTGTTTGTAGACACGCACGACCCGCGTTTCCCGTGGGTGGCGTTCTTCGCCCTCTCCCACATCCGAGCTGGGACCGAGCTGACGTGGAATTACAACTACGACATAGGCTCCGTGCCTGGGAAAGTGCTCTATTGCTACTGCGGGGCGCCCAACTGTAGAGGTCGGCTGCTGTAA
- Protein Sequence
- MSLFQTPPPRGIQTRAQFKKELTANEEVKNLEVKSDVQFDRLDAVKESGKVKSDIVLTYATGSRQDGGEHKCTSTRASSSSTRQKRLEYEAAQAKALIDLDLAKKKAEIDLANKKAEIEKELLEKKLAIDLADLDSHSKCSRRSSIASYQNKVETWLERSVAAPGSSLNCAINSGDKLEQRPSTTAADMGTCHAIAELSNTIKNADSAAASNGNNQQLLSRLATSKDLPLYFGDPMEWLQLKEAFYESTRLCKYSEQENLWRLRKCLRGEAKEAVSSLLMSATSPQEIMETLELRFGRPENIVRRVTSQLKKLQPLPQAYTTEIVNFAIKLKNYITTIRNIQQKDYLRSPELITIIISKLPTALINLWANYLHDNRDSDMPKLELLSRFLHAEAKKVAESGLSYVYASDSKRNPTEHVQRNANKQSVFACTAAESVTPKCNFCKRYSHKLTECSRFKRALRKDKWRYVRVNNLCYKCLGARHTDISLCTAECCDVEACGGPHHRLLHWMKPQTVSQDQQCDTDVVAHAITSGQSQVPVLSVTKNLESKLVMLKIVPITIHGPKQSVDTYGLLDDGATVSLISADIADQAGLYGKSLTMRASSAWDSAELKDISVVKLSMEVAPSDLPPKGEISRPPLRVGMSVYAMRNTFCSWLKVKITEVHPKGNNATVPFTMCRVKFDRVKVNPRVLPARCLAYAEPADVRLTIGTRVIALFRESTTDGSQPKESFYSGIVSEIPNPVNKFRYLIFFDDGYAQYVKHCDTRVVCESAALVWEEVHPFSRDFVRKYLLTYPERPMVRLHAGQSLKTEWNGKWWVSKVIQVDASLVQVHFEEDNRTEWIYRGSTRLAPLFLELQAAERQRSRPMPRSNQRRMNMPYVEYTRSDEQGKDSTPQTAQAQQQHNEELRRQRAVAKKSTVPPLHQPPPPPAGANLDSVTSRVVYYTPKNAVKPYKMVKHTCSPQCKRSDVLALKDLRTYNPLAKPLLSGWERQVVRFKGHKEVMYRAPCGRRLRSVRELHRYLQAVRSDMPVDLFDFHPGTHCLAEFVLNKCLVGKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNIDPDFLCGCDCEDDCEDKSKCACWQMTLEGARTIGLDDSNVGYEYKRLPEPLPSGIYECNSRCKCRQTCLNRVAQHPLQLKLQVFKTYNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPDADKKLDKMGQNKSSEEDESSTEEEEDNTHDDKTDDDFRPGFIGMGLTDFDKRLRKREKKERKIKAAKDKRKEGDEKKDSVDEDGCITISDDEEVREPSSFMAQTRMDANYVSKYRSVRSYFGKDEACYIMDAKVQGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVAFFALSHIRAGTELTWNYNYDIGSVPGKVLYCYCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -