Hcos018502.2
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000345.1:6995-24661[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.5e-11 8.4e-08 33.0 0.0 4 39 172 208 169 212 0.90 2 4 6.4e-11 5.7e-08 33.6 0.3 2 39 224 261 223 264 0.92 3 4 4e-14 3.5e-11 43.9 0.0 2 45 279 323 278 323 0.96 4 4 2.2e-18 1.9e-15 57.5 0.1 1 43 330 373 330 374 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCGACGGAATAGCACAAGTAAAATGCGAACCACTTTCGGACGAAGAGGACAGCAACTCGCAATTAACACACAGTTTCTTGACCAATCAGGTGTCCAGACATCACATTAAGTCTGAGCTCTGCCATCGCGATGACGATGTACCCGAAATACTGCAGCATTTACAGTCGCAGACTGGACTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACTCCCGTCTGCGTCAAGCAGGAGCCCGCCGAAGCCCCGCCGACCACCACACTGGAGACCCTCGAACCCGCACCCCATACAGCCATGGGCGCCACTCTCATTGACAGACACATGTCGATGCTGAGCGAAGGACCCCCGTCGTCGGACTTCATGCCGTTGATGTCAGTCAAAGATGAGCCTTTGTCAGAAGGAGAACAACACCAGTACAGCGGCGAGGACACGAGTGACTCGTGCAGCACGCAGCCGGAGCCAACGCTGCGCTGCAGCCCGAAGAGCTGGACGCAGCGCGACATGGACAACGCCCTGGAGGCACTCAGGAAACACAACATGAGCCTTACAAAAGCTTCAGCAACATACGGTATCCCGTCCACAACGCTGTGGCAACGCGCGCACCGGCTGGGCATTGATACGCCCAAGAAGGAGGGAGCATCGAAGTCTTGGAGCGAGGCTGATTTGCGAGGTGCCTTGCACGCGTTGCGAGCTGGTGCGATATCAGCCAACAAGGCCAGTAAAGCATATGGCATCCCCAGCAGCACGTTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCCGCGCCGTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTTCGGGATCCCCACTGGTACACTGTACGGGCGGTGTAAGCGAGAAGGCATCGAGTTATCCCGATCAAACCCTACTCCGTGGTCCGAAGACGCGATGGGAGAGGCATTGGAGGCTGTCAGAGTGGGTCAGATGTCAATCAACCAGGCGGCCATACACTACAACTTGCCGTATTCCTCGCTCTACGGACGCTTCAAGAGATGTAAATACCAAGCGCAGGTCATCCAACCAACTCAACAGCAGGACATGCAAAAAATGGAGATGGAGCAACAGCCCCACCAAGAGCTACCGTACTACCACCAAATGCCCCCCCACCACGAAGAACACCCACCATACATACAACACAACATCCACATGACAGAACAAACGCACGAATTGCACGGGCCCATGATGCAGGACCCGTACGGTCAGAGCCTGTACTACGCGACCTGCAACGGGATGGTCAGCTGA
- Protein Sequence
- MPGDGIAQVKCEPLSDEEDSNSQLTHSFLTNQVSRHHIKSELCHRDDDVPEILQHLQSQTGLEELAPLAPAGPAATPVCVKQEPAEAPPTTTLETLEPAPHTAMGATLIDRHMSMLSEGPPSSDFMPLMSVKDEPLSEGEQHQYSGEDTSDSCSTQPEPTLRCSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQVIQPTQQQDMQKMEMEQQPHQELPYYHQMPPHHEEHPPYIQHNIHMTEQTHELHGPMMQDPYGQSLYYATCNGMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -