Hham003521.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- grn
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000031.1:395133-428497[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-19 3.4e-16 58.5 4.7 1 35 223 256 223 257 0.98 2 2 4.8e-19 1.2e-15 56.8 7.5 1 35 280 313 280 314 0.97
Sequence Information
- Coding Sequence
- ATGGGTGCGTTTTTTTTGGATCCCTCGGGATCGCAACGGGCTCGATATTATCATCAAAGTATGCACGCGCCTTATGGAAGTGTAGCTAGTCATGCATCGCGAATGTCGTCAAGTCAAGTATGTCGGCCGCATTTCCATCCACCTCTTCATCCGTGGCTCTCCGATGCCTCGGCGAAACCATTGGGCCACTCGGGACCGTGGGTGCCTTTTGGTGGTGCCGGTGATCCAGACAAAAGCCAAAGCCCAAATACAGCACCAGCTCAACCTCACAATATTTTCTCGTTTCCACCAACACCGCCCAAGGACTCGACACCCGACTCGGTAGCCCCAAGTGCTGGTTCGGAGTATCAGAGCGCGGTGGCAGCCGCGATGGGCGCGTTCATGCACGAGAATCCCCAAAGTTGCGCCCTGGACGTGAAACCCACGGGCGTGACATCGAACGTAAACGGAAGTAACAAACAACGTGAAGGTAGTGAATACGACGGGACCTCAGGTGGCATGTTTAATGGTAACTTTGAAAGCTCGTACGGGGCTACGCCGTATGGCCACGGTATTCACGCGGGGGGCTATTCGCCCCAAAGCAAGGGCGGTCTGGGTGGTTCAGCGCAAGTTCAGTCGCCGAACAAACCCAGGAATAAATCGAGGACGAGTGCCGAAGGCAGAGAATGCGTGAATTGTGGTGCAACAAGTACGCCACTGTGGAGACGAGACGGCACTGGACATTATTTATGTAACGCGTGTGGATtgtattataaaatgaatGGACAAAATAGGCCTTTAATTAAACCAAAGAGAAGACTGAGCTTACAAAGCGCGGCAAGGAGAGCGGGTACGAGCTGTGCAAATTGTAAAACGACCACAACGACGTTATGGAGACGGAATCAAAACGGGGAACCAGTGTGTAATGCATGCGGGTTATATTACAAATTACATAATGTTAATCGGCCGTTAACGATGAAAAAAGAAGGTATCCAAACGCGGAATCGAAAACTTtcatcaaaaagtaaaaagaaaaaatcaggGGCGGCGTGTTTGTCTTTAGGTGGAATGATGGGCGATATGATGAAACCTCTGGATACGAAAGgTGGTTTTGGACAATTTAATTCAATGGGTGCCGGTCATCCTCACTTAAACGCGGCCCTGCATCCTCACCATGCAATGAGCCATTGGTACCAGAACAGTACCCATCCTCATGGGTTCGTTAGTGGACCACCACCTCCTGCACCTCCACCGACTGCTTCTTACCATCACCATATGAGTTCCTTAAGTGCGGCAGGGTTAGGATTAACATCAAATGGAATGGCTGGATGGCGGTCGGAATACACGTGA
- Protein Sequence
- MGAFFLDPSGSQRARYYHQSMHAPYGSVASHASRMSSSQVCRPHFHPPLHPWLSDASAKPLGHSGPWVPFGGAGDPDKSQSPNTAPAQPHNIFSFPPTPPKDSTPDSVAPSAGSEYQSAVAAAMGAFMHENPQSCALDVKPTGVTSNVNGSNKQREGSEYDGTSGGMFNGNFESSYGATPYGHGIHAGGYSPQSKGGLGGSAQVQSPNKPRNKSRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKSGAACLSLGGMMGDMMKPLDTKGGFGQFNSMGAGHPHLNAALHPHHAMSHWYQNSTHPHGFVSGPPPPAPPPTASYHHHMSSLSAAGLGLTSNGMAGWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059429; iTF_00111241; iTF_01480525; iTF_01366713; iTF_00049565; iTF_00921119; iTF_00753472; iTF_00928329; iTF_00950384; iTF_00151937; iTF_00004344; iTF_00855580; iTF_00756300; iTF_00807939; iTF_01098860; iTF_00137562; iTF_00956704; iTF_00395964; iTF_00814756; iTF_00765216;
- 90% Identity
- -
- 80% Identity
- -