Hham009116.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010002411.1:1898-4670[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0049 28 4.9 0.1 23 48 217 242 212 249 0.88 2 4 2.4e-05 0.14 12.2 0.1 21 45 272 296 267 303 0.89 3 4 0.0031 18 5.5 0.3 18 45 327 355 324 363 0.83 4 4 2.4e-05 0.14 12.3 0.1 25 53 363 391 357 392 0.88
Sequence Information
- Coding Sequence
- ATGGATACGAAACAATCCTTGGAAATGCAAGCAAAAGGAGAGGCTTGTCCCCAGTGCCACAATCTATCTTCAAAGCCGTCAAATCGTTTAGTGCAGGACACCTGTGGACACACAAAGTGTCGGTCGTGTCTTCTCGCAGACGATGACTACTGCCAACAATGTGTTTCAAGTCTAGAGTCAAATCAAGTAGACGTGAATGGTTCAAATGATCATGTTACTTCTACGGAAGTAACTGATAATCACACTGCAGTTATTTGCAATGGGAATACCCAACAAGTAAACCATGAACAAACCAATGAAATCTATGATGAAACGAATTTGAATGGACTGGTTGACCTAGAAACTAATAAGACAGTACTGGAGGATAATGAAGAGTCTAAAACCAGTGGCTCCGTCGTCACTCCTGTCCGAGAGGAAAACGAACCTAAGAAGAGTGGTTCTATCGTCATTCCCGTACACATTAGAATCCAAAAGGATCCTGTATGTTACTTGTGTACCATATGCAATAAGACTTTTACCACAAAAGGGCACATAAAGTATCATCAATATTGCAATGGCGATTTGAAACCATTTAAATGTGAAACTTGTGATAAAGAGTTTGTTCTGAAAGTACAATACCAAGTACACCAATGGAAGCACAACAATATAAAACCctttaaatgtcaaatatgCCAGAAATCATTTagagaaaaaagcaaattatcCAGACATATGACGGCTTTGCATTCATCTGGCAAAGATTACGTTTGTCCTCATtgtggaaaatgttttaaaattaaggatTCCTTAAGGATTCATAGTTTAATTCATAAGAACGAACGTCCGTTTGCTTGCAACATCTGTCCAGCCACTTTTAATAACTCAtcaaatttgaagaaacaCGTTGCAACCCATTCTAATTTTCCAGGTGAAAAAGCTCATATGTGTGATCAGTGTGGTAGaagatttaaattgaaatgggcACTGTCAGTTCATAGAAGATCCCATTCGAATATCAGGCCTCATGCATGTAATATTTGTCCCAAAAcgtttgttaatttaaaggaCTTGCAGAGGCATTTATTGATACATTCAGatgTAAAGCAGTTTACTTGTGGAATCTGCATGACGATGTTTCGACGCAAAGACATCCTGCGTCGTCACATGAAAAACACACATCCAGGTAAGCAGGGCGAGATAATAAAGACTTCGGTGAAAGTTTCAGACATTCCGAAAAAATCGGTAGTCATTGATAATCCAAACGCTGTTAATGTGATAACCGCCTCCCCGGCCATTACAAAATGTAAGGCCGATGCAGTGGCGCTACCTACACCTATATCTACTGATTCTAGGCCCTCCGGAACCGTCATCAACGGACCAATCAAGCTCGCGTTTAAAACGCCAGCTTTTAAGAGCCATTACAATATTACGAGAGGCGGCGACTTCATACCAAATGCTCAATTTACGAagaatttatcattaattggAAACACCATCGACTACCACCAGTCGTCAGGCGAATTGGCTCGAGGCCAAAACGTAAATTCGTCCCAGTTAAGTGGCACTAGTGAACTGTCCACATTTTCCAATACTCTGCATTACGAGACTTCATTCCAGAATCACAAGCACGCcctcattaaaaatattaaatttaaagttccGGCTGAATATACGTTTAAAGCGAGCGGtcaaaaacatatttgcaATAGTGACGAGCATCGCGATGACATTGCCAGTGTTATCGTGAATAACAGTAATGTATCAAGCACTACTTGTGATGTCCATTGGCGTAGGCGGACGTCCCAAAATCttgtgttgaaaaattaa
- Protein Sequence
- MDTKQSLEMQAKGEACPQCHNLSSKPSNRLVQDTCGHTKCRSCLLADDDYCQQCVSSLESNQVDVNGSNDHVTSTEVTDNHTAVICNGNTQQVNHEQTNEIYDETNLNGLVDLETNKTVLEDNEESKTSGSVVTPVREENEPKKSGSIVIPVHIRIQKDPVCYLCTICNKTFTTKGHIKYHQYCNGDLKPFKCETCDKEFVLKVQYQVHQWKHNNIKPFKCQICQKSFREKSKLSRHMTALHSSGKDYVCPHCGKCFKIKDSLRIHSLIHKNERPFACNICPATFNNSSNLKKHVATHSNFPGEKAHMCDQCGRRFKLKWALSVHRRSHSNIRPHACNICPKTFVNLKDLQRHLLIHSDVKQFTCGICMTMFRRKDILRRHMKNTHPGKQGEIIKTSVKVSDIPKKSVVIDNPNAVNVITASPAITKCKADAVALPTPISTDSRPSGTVINGPIKLAFKTPAFKSHYNITRGGDFIPNAQFTKNLSLIGNTIDYHQSSGELARGQNVNSSQLSGTSELSTFSNTLHYETSFQNHKHALIKNIKFKVPAEYTFKASGQKHICNSDEHRDDIASVIVNNSNVSSTTCDVHWRRRTSQNLVLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00830657;
- 90% Identity
- iTF_00830657;
- 80% Identity
- iTF_00830657;