Hham006480.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- Tfip11
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000004.1:79989-82898[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-65 2.2e-61 207.9 14.2 93 275 121 300 102 300 0.96 2 2 0.16 9.4e+02 -0.9 0.2 242 271 312 341 303 345 0.72
Sequence Information
- Coding Sequence
- atggaagaagaagaagaaatggaACAGTTTGAAATAACAGACTACGACATTGAAAAcgaatttaacataaataggAGTAGAAAGGGATTGAGTAAACATCAACaaatttatgGTATTTGGGCCGATGATAGTGAGGACGACGACGAAAAAAGAGTATTTCCACAGGCATCTAAACCTAAAAATTACTCTGCGCCAATTGGTTTTGTAGCCGGTGGCTTTCAACAGACATCGAAAAAACGTGAGGATACTCAATTTGATGAAGATTCTGATGAAGAAAAGCCAGGACcgtctttcaaaattaataacagcTCAGAATCAGAGGAAGAAGTAGCTCCTAGAATGGGAACTAAAACCCAATTTATGGACTTTTCTCTGTCACGtggaTGGAACCCTCGTGATTGTGATCCATTAATTACTCTAATTGAAGCCTGGAAACATATTTTACCTTTATGGAttctaaacaatatttatgacCAGATGATCATGCCTCGAATTCTCGGCGAGGTCAACGAGTGGAATCCTTTGACTGACACTATTCCTATTCATCTCTGGATTCACCCATGGATACCTCTATTGGatgaGCGTCTGCAAGAGAAAATCTATCCGgtcattcaagaaaaattaggCACAGCTTTGAACAGCTGGCACCCATCGGATCGGTCTGCCAAATTGATGTTGCAACCGTGGCAACGTGTACTATCCGAAGGTGCCTTTTTGGCTTTTTTGCTCAAGTATATTGTGCCGAAGTTGGAACTTTGTATGCAATCTATGGTGATCAATCCGCATCAGCAACTACTTGaTCCTTGGCATTGGGTTATGGACTGGAAGGACATGTTATCTATACCAAATATAACTCTGATTTTGGATAAATTCTTCTTTCAAAAATGGCTGCAGACTTTAACCATGTGGTTGAATCACAATCCGAATTATACTCAAGTAACCGAATGGTATTCTGGATGGAAAAGGATGTTTTCTGATGATTTACTGACACAACCCACTGTAAAAGATAGTTTTCACAAAGCTTTGGAAATTATGAGCAGGGCAGTTGGTATAATTCAGCAACCGGGAGCTCAAGAATCTATTTCCTATCTGACGAGTGCAGAACAAATTTCCGTTCAACAACCGTCAGCTCCTAGAATAGAGagttTGGCCGAGGCAGTAAGAAGTGCAGCTCAAATACCTCAAGGATTCAGAGATTTAGTCACAAGACGTTGCGAGGAACGTGGCATTTTATTTGTACCCATTCCTAATAAATTTCACGAAGCTAAACAAGTGTATCGGATCGGCTCGAGTGGAGTCCAATGTTACATTGAtagaaatgttatattttatagtcAAAACAATTCGACGTGGATACCAACTTCCCTTAACAGTTTATTAGatatttcttgttaa
- Protein Sequence
- MEEEEEMEQFEITDYDIENEFNINRSRKGLSKHQQIYGIWADDSEDDDEKRVFPQASKPKNYSAPIGFVAGGFQQTSKKREDTQFDEDSDEEKPGPSFKINNSSESEEEVAPRMGTKTQFMDFSLSRGWNPRDCDPLITLIEAWKHILPLWILNNIYDQMIMPRILGEVNEWNPLTDTIPIHLWIHPWIPLLDERLQEKIYPVIQEKLGTALNSWHPSDRSAKLMLQPWQRVLSEGAFLAFLLKYIVPKLELCMQSMVINPHQQLLDPWHWVMDWKDMLSIPNITLILDKFFFQKWLQTLTMWLNHNPNYTQVTEWYSGWKRMFSDDLLTQPTVKDSFHKALEIMSRAVGIIQQPGAQESISYLTSAEQISVQQPSAPRIESLAEAVRSAAQIPQGFRDLVTRRCEERGILFVPIPNKFHEAKQVYRIGSSGVQCYIDRNVIFYSQNNSTWIPTSLNSLLDISC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -