Hdol005440.1
Basic Information
- Insect
- Hyposoter dolosus
- Gene Symbol
- -
- Assembly
- GCA_963921915.1
- Location
- OY998131.1:10216903-10222214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 23 5.8 0.2 3 19 474 490 472 490 0.90 2 13 4.1e-05 0.0038 17.7 1.6 1 23 544 567 544 567 0.97 3 13 0.57 54 4.7 0.3 2 23 583 605 582 605 0.94 4 13 0.018 1.7 9.4 0.5 1 23 640 663 640 663 0.93 5 13 0.038 3.6 8.4 2.1 1 20 675 694 675 699 0.91 6 13 0.54 51 4.8 3.2 1 12 713 724 713 738 0.72 7 13 0.23 21 5.9 0.3 1 23 744 767 744 767 0.89 8 13 1.7e-06 0.00016 22.1 2.1 1 23 782 804 782 804 0.98 9 13 2.1e-06 0.0002 21.8 0.5 1 23 810 832 810 832 0.99 10 13 0.074 7 7.5 4.1 1 23 838 860 838 860 0.97 11 13 0.37 35 5.3 6.1 1 23 866 888 866 888 0.92 12 13 7.7e-07 7.3e-05 23.1 2.4 1 23 894 916 894 916 0.99 13 13 5e-06 0.00048 20.6 2.5 1 23 922 945 922 945 0.97
Sequence Information
- Coding Sequence
- ATGCTCACGTTGATCCTTCAAACGCAAGAAGGACATCAAATCGAATTAAACGTTCAGCCAGAGGACACTTTTAGCGATTTGAAAAGTCAATTCGCGCATCACGAGCTCGCTGGTCTGTCGGATTCGCTGCAACAGCTGATCACTGGTGGAGCCAGCGTTTTAGAAAATACCAAGATATTCGACTTTGTCACCAGCAgtgCTCAGGAATGGCTAGGTACAAACGCAATTGCGGCAGAGCAGCTATCTTCTCAGTCATCCAGGATAgacgatcgatcgaaagaaTGCAGCCCTCGAAGCAGTGGCGATAATCAAGCCACAGTGCCTGAGCAACCTATTTTTCCGTTGCCCGTTGATCAGACCAGCCGTTGCGACCAAGAATCTTCGATTCTACTTGCGGATCACAAAAATCAGCGTTTGAGATCAAACGCGCCGGAAGAAATCAGTCTGACCAAAAATGTACTCGAGGAAgtgggagagaaagaagaagaggaaaaagaagaaaaatcacatGGAACTAACGATATAGAAATCGATAGTAAAAATTATCTCGACTTATCGAAGTCGGGAGAGAGTTCTGAACACCCTGGAATTCTCTGTCGTTTGTGCGGTAAACTCGCGGTCAATCCTATACACCTGTATGCCATGAAGACGGAAAATATTCAGAACCACGAATTCAGTATCGCggataaaattaatttgtgCCTCCCTGTTACGATTGCAGTAACGGATCCATTGCCAAAACAGATATGCCACGATTGCGACGTCAAATTGAACGTTTGCCACGATTTGGCGGTACAATCTTTGCAAGCGGAAGCCAAACTGAAAAGTTTgttgcgaaagaaaaagctcTGTGTGGAGGTCAATGCCGAAAATTGTCCTTTGTGCATCGATGGTAGCATGAAGATGCTTAAGCGAAGTGGTATCTATCGGAAAGAAGATTGGAATAATATTTCAAGGCCGTTGCCAACATCGTCgccaaaaaatgaagaaaaaattaaatgtgaaAGATCAAACGACGGCGGAGCTGAGATTAAATCTTGGGAAACGAAAGTCGAAATCCCCGTAACTATTTGCCATAACTTTATAGACGAATCCACAACTACCAAGTTCGATACTGCGCTCCAATCGGAAAATTCTCAGGATGACATTACATTTTCACTGccaatcgatcgatcaaatAGTTCTACAAATTGctcaaaaatcgttgattctAGGGAACGAGGAAGCACCGTCAACAGTCAAGATTGTCAAGTTAACGATCGGATCTCATCGCGCGGTTCTGTTGTTTCCAAGTCCGGAGAAGTAGCAGTTGGTGCTTTTGTGGAGGCTGGAGAGCTCCAACTTGACGACAGTGGTCATCAGCTCGTTACAGTCGTCGAAGAAAGCGCTTCATCGTCGCATAACTCAACTGGAATCTGTTGCGACGATTGCGGCAAAATATTAACAAGCGAAGGAGTTTTACGAGATCACGATTGCTCGGAGATTAAATCGAATGACTCTTCTATGAGCATCGAAGCGAAGTATCTCGGAAAGAGCGTAGTCAGCAACAGGGACACGtcaaaattgagaaatatcgAAGAGAAGTCGGCAGATAAGAGAGAGGGCGAAGTGTCAGCGGGAAAAGTCGGTTACTCCTGCAAGTTTTGTAGCAGAGAATTCGCGCAAAAGGCGAGTCTcgaaaaacatacgaaatCGTTGCACAATGATTCGTTGAAAGAGTTGCTACAAATTCCAAAGTGTTGTTGGAAGTGTAAAGTTTGTTGCGAGGCTTTCGCGCGAGAGAAGGATGCGGAGGCTCATGCACGGGAGAACCATCTCTCGTCGTTCTTTaacgagagaaaggaagaaaacgaggaaaatattaattgtgGTCAGAGCGAGGAAATGCTGATCGAGCAGTTGATCGTAACGCGTCTGTACGTCTGCGAATATTGTGAGCTTAGGTTTACAGTGCCGAGATCGGTTCACGAGCACCGAGAGCTCGAACATTCCTCCAGCAACGGCAAGAGCAGGCTCAACAAATATATTTGCACAACGTGTAATTCAACCTTCGATTCGCACAGAGAATTGACGAGCCACAAAGCGCAACGTTCGCATCGTAAGTCCCTGGATGACAATCTtggaataaaacaattttacgTTTGCAAATATTGCGACaagaattttttacattatacGAGTCACACGAGTCACGTACTGCAACATACTCGGACGGATCCTCGGCGGCCTTATCTCTGCCGTGTTTGCAATCTTAATTTCGTAAACTATCGAGAGATTTCTAGGCATCGGGACGAAGCTCATCcttattatcaattaattcTCCACGAGAGATCGAGTTTCGTGTACAATTGTCAATATTGTCATAAAGAATTCAGCCAAGAGGTTGCCTTGATGAAACACATAAGGATGCACACTGGTGAGCGTCCTTACAAATGCACCATTTGTGCCAAAGGGTTCTCTCAGAGTTCCGGCCTGTATACCCATTTGAGGGTTCACTCCGACGTCAGACCTTACGCTTGCACCAAATGTTCTCGTACCTTCAAGATCAAGGGCGATTGCGACAATCACATGAAAAAACACGCTGGCAATCGTCCCTACAAATGCGAATTTTGCAACAAAGCATTCATGACTCAGCACGTTTATAGTCAACATTGCAAAATTCATACGAATGAAAGGCCCTATAAATGTAATTTGTGTGGGCAGGCCTTCAGGAGGTCCCACGTCCTTACCGTTCACATGAGACGACATACCGGTGAGAAACCTCATGTTTGCGACATGTGTCCAAAAACTTATCGTCAACGTGGTGATCTTTCCAAGCATCGAAGAACACAGCACGGGATAGTCAACGGCGGTGATGTTCCTGGCATTGCCAACCTCACTAAATCACCAAAATTCGCTTCTGCCTTCCAATCTTATTCCAATGATCGGCGGGATGAGCCGCAGCAGCCGCACGATCCTTTCTCGAGCTCAGATCACTTTCCAAGGACGAGTAAGACTCTTGCCGCTGCGGATCTTCGCGCAGATGCTCGTACCGTCGATACTTGCATTTTGACATCACCCTGA
- Protein Sequence
- MLTLILQTQEGHQIELNVQPEDTFSDLKSQFAHHELAGLSDSLQQLITGGASVLENTKIFDFVTSSAQEWLGTNAIAAEQLSSQSSRIDDRSKECSPRSSGDNQATVPEQPIFPLPVDQTSRCDQESSILLADHKNQRLRSNAPEEISLTKNVLEEVGEKEEEEKEEKSHGTNDIEIDSKNYLDLSKSGESSEHPGILCRLCGKLAVNPIHLYAMKTENIQNHEFSIADKINLCLPVTIAVTDPLPKQICHDCDVKLNVCHDLAVQSLQAEAKLKSLLRKKKLCVEVNAENCPLCIDGSMKMLKRSGIYRKEDWNNISRPLPTSSPKNEEKIKCERSNDGGAEIKSWETKVEIPVTICHNFIDESTTTKFDTALQSENSQDDITFSLPIDRSNSSTNCSKIVDSRERGSTVNSQDCQVNDRISSRGSVVSKSGEVAVGAFVEAGELQLDDSGHQLVTVVEESASSSHNSTGICCDDCGKILTSEGVLRDHDCSEIKSNDSSMSIEAKYLGKSVVSNRDTSKLRNIEEKSADKREGEVSAGKVGYSCKFCSREFAQKASLEKHTKSLHNDSLKELLQIPKCCWKCKVCCEAFAREKDAEAHARENHLSSFFNERKEENEENINCGQSEEMLIEQLIVTRLYVCEYCELRFTVPRSVHEHRELEHSSSNGKSRLNKYICTTCNSTFDSHRELTSHKAQRSHRKSLDDNLGIKQFYVCKYCDKNFLHYTSHTSHVLQHTRTDPRRPYLCRVCNLNFVNYREISRHRDEAHPYYQLILHERSSFVYNCQYCHKEFSQEVALMKHIRMHTGERPYKCTICAKGFSQSSGLYTHLRVHSDVRPYACTKCSRTFKIKGDCDNHMKKHAGNRPYKCEFCNKAFMTQHVYSQHCKIHTNERPYKCNLCGQAFRRSHVLTVHMRRHTGEKPHVCDMCPKTYRQRGDLSKHRRTQHGIVNGGDVPGIANLTKSPKFASAFQSYSNDRRDEPQQPHDPFSSSDHFPRTSKTLAAADLRADARTVDTCILTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00829025;
- 90% Identity
- -
- 80% Identity
- -