Basic Information

Insect: Hyposoter didymator
Gene Symbol: -
Assembly: None
Location: scaffold429:821448-827099[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.9 7.6e+02 0.8 0.3 3 16 283 296 282 298 0.76

2 14 1.6 1.4e+02 3.1 0.0 3 19 507 523 507 523 0.93

3 14 0.00026 0.022 15.1 2.4 1 23 577 600 577 600 0.97

4 14 1.5 1.3e+02 3.2 1.6 2 23 616 638 615 639 0.94

5 14 0.004 0.34 11.3 0.4 1 23 673 696 673 696 0.93

6 14 0.0074 0.63 10.5 1.9 1 20 708 727 708 732 0.91

7 14 0.4 34 5.0 4.7 1 20 746 765 746 771 0.74

8 14 0.21 18 5.9 0.3 1 23 777 800 777 800 0.89

9 14 1.6e-06 0.00014 22.0 2.1 1 23 815 837 815 837 0.98

10 14 2e-06 0.00017 21.7 0.5 1 23 843 865 843 865 0.99

11 14 0.07 6 7.4 4.1 1 23 871 893 871 893 0.97

12 14 0.35 30 5.2 6.1 1 23 899 921 899 921 0.92

13 14 1.9e-06 0.00016 21.8 4.5 1 23 927 949 927 949 0.99

14 14 4.7e-06 0.0004 20.5 2.5 1 23 955 978 955 978 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.9	7.6e+02	0.8	0.3	3	16	283	296	282	298	0.76
2	14	1.6	1.4e+02	3.1	0.0	3	19	507	523	507	523	0.93
3	14	0.00026	0.022	15.1	2.4	1	23	577	600	577	600	0.97
4	14	1.5	1.3e+02	3.2	1.6	2	23	616	638	615	639	0.94
5	14	0.004	0.34	11.3	0.4	1	23	673	696	673	696	0.93
6	14	0.0074	0.63	10.5	1.9	1	20	708	727	708	732	0.91
7	14	0.4	34	5.0	4.7	1	20	746	765	746	771	0.74
8	14	0.21	18	5.9	0.3	1	23	777	800	777	800	0.89
9	14	1.6e-06	0.00014	22.0	2.1	1	23	815	837	815	837	0.98
10	14	2e-06	0.00017	21.7	0.5	1	23	843	865	843	865	0.99
11	14	0.07	6	7.4	4.1	1	23	871	893	871	893	0.97
12	14	0.35	30	5.2	6.1	1	23	899	921	899	921	0.92
13	14	1.9e-06	0.00016	21.8	4.5	1	23	927	949	927	949	0.99
14	14	4.7e-06	0.0004	20.5	2.5	1	23	955	978	955	978	0.97

Sequence Information

Coding Sequence: ATGCTCACGTTGATTCTTCAAACGCAAGAGGGACATCAAATCGAATTAAACGTTCAGCCAGAGGACACTTTTAGCGATTTAAAAAGTCAATTCGCGCATCACGAGCTCGCTGGTCTGTCGGATTCGCTGCAACAACTGATCACTGGCGGAGCTAGCGTTTTAGAAAATACCAAGATATTCGACTTTGTCACCGGCAGTGCTCAGGAATGGCTAGGTCCAAACGCAATTGCGGCAGAGCCGCTATCTTCTCAATCATCCAGGATGGATGATCGATCGAAAGGTTGCAGCCCTCGAAGCAGTGATGACAATCAAGCCACAATCCCTGAGCAATCTATTTTTCCGTTACCCGCCGATCAGACCAGGCTTTCCGACTGTTGCGTGGAAATAGGAAAGCTCGATCCGTACAATAAGATTTTTTCTTCGGAAGCGGAAGAATGCCAAAGGTTTTTTTTAAACGATAGCCGTTATGACCAAGAATCATCGATTCTAATTGCGGACCACAAAAATCAGCGTTTGAGATCAAACGAGCTGGTGGAAAACCGTCTGACCAAAAATGTACTCGAGGAAGAGGGAGAAAAAGTAGAAAAGGAGAAAGAAGAAAAGTCACATGTAACTAACGATATAGAAATCGATAGTAAAAATGATCTCGACTCATCGAAGTCGGGAGAGAGTTCAGAACACCCTGGAATTCTCTGTCGTTTGTGCGGTAAACCCGCGGTCAATCCCATACACCTGTACGCCATGAAAGCGGAAAATATTCAGAAGCACGAATTCAGCATCGCGGATAAAATTAATTTGTGCCTCCCCGTTACGATTGCAGTAACGGATCCATTGCCAAAACAGATATGCCACGATTGCGACATGAAATTGAACGTTTGCCACGATTTAGCGGTACAGTCTTTGCAAGCGGAAGCCAAACTTAAAACCTTGTTGCGAAAGAAAAAGCTTTGTGTGGAGGTCAATGCCGAGAATTGCCCTTTGTGCATCGATGGTAGCATGAAAATGCTTAAGCGAAGTGGTATCTATCGGAAAGAAGATTGGAATAATATTTCGAGGCCGTTGCCAGGATCGTCGCCAAAAAATGAGGAAAATATTGAATCTGAAAGATCAAACGACGGCGGAGCTGAGATTAAATCTTGGGACACAAAAGTCGAATTGCCTGTAACTATTTGCCATAACTTTGTAGACGAATCTACAACTACCAAGTTCGACTCTGCGCTCCAATCGAAAAATTCTCAGGATGACATTAGATTTTCACTGGCAATCGATCGATCAAATGGTTCGACGAATTGCTCAAAAATCGTTGATTCTAGGGAGCGAGGAAACACCGTCAACGGTAAAGATCGTCAAGTGAACAATCTGATTCCATCGCGCGGTTCTGTTGGTTCCAAATCCGGAGAAATACCAGTTGGTGCTTTTGTGGAGGCTGGAGAGCTCCAACTTGACGAGAGTGGTCATGAGCTCGTTACAGTCGTCGGAAAAAACGCTTCTTCGTCGAATAACTCGACGGGAATTGGTTGCAACGATTGCGGCGAAATATTAACGAGCGAAGGAGTTTTACGAGATCATGATTGCTCGGAGGTAAAATCGAATGACTTCGCAATGAGCATCGGAGCGAAGTATCTCGGAGAGAGCGTGGTCAGGAACAGAAAGACGTCAAAATTGAGAAATATCGTAGAGACTTTGGCAGAGAATAGAGAGGCCAAAGTGTCAGCGGGAAAAGTCGGTTACTCTTGCAAGTTTTGTAACGGAGAATTCACGCAAAAGACGAGTCTCGAAAAACATACGAAATCGTTGCACAGCGATTCGTTGAAAGAGTTGCTACAAATTCCAAAGTATTGCTGGAAGTGTAAAGTTTGTTGCGAGGCTTTCGCGCGAGAGAAGGACGCGGAGACTCATGCAAGGGAGAACCATCACTCGTCGTTCATTACCGAGAGAAAGGAAGAAAACGAGGAAAATATTGATTGTCGACAGAGCGAGGAATTGCTGATCGAGCAGTTGATCGTAACGCGTCTGTACGTCTGCGAATATTGTGAGCTGAGGTTTACAGTTCCGAGCTCGGTTCACGAGCACCGAGAGCTCGAACATTCCCCTAGCAACGGCAAGAGCAGGCTCAACAAGTATATTTGCACAACGTGTAATTTAACGTTCGATTCGCACAGAGAATTGACGAGCCACAAAGCGCAACGTTCGCATCGTAAGTCCCTGGAGGAAAATCTTGGAATCAAGCAATTTTACGTTTGCAAATATTGCGACAAGAGTTTTTTACATCATACGAGTCACACGAGTCACGTGCTGCAACATACTCGAACGGATCCTCGGCGGCCTTATCTCTGCCGCGTCTGCAATCTTAATTTCGTAAACTATCGAGAGATTTCGAGGCATCGGGACGAAGCTCATCCTTATTATCAATTAATTCTCCATGAGAGATCGAGTTTCGTGTACAATTGCCAATATTGTCATAAAGAATTCAGCCAAGAGGTTGCCTTGATGAAACACATAAGGATGCACACCGGCGAGCGTCCTTACAAATGCACCATTTGTGCCAAAGGATTCTCTCAGAGTTCCGGCCTATATACCCATTTGAGGGTTCACTCCGACGTCAGACCTTACGCTTGCACCAAATGTTCTCGTACTTTCAAGATCAAGGGCGATTGCGACAACCACATGAAAAAACACGCTGGCAATCGTCCCTACAAATGCGAATTTTGCAACAAAGCATTCATGACTCAGCATGTTTATAGTCAACATTGCAAAATTCATACGAATGAGAGGCCCTACAAATGTCATTTGTGTGGGCAAGCCTTCCGGAGGTCCCACGTGCTTACCGTTCACATGAGACGACACACCGGTGAGAAACCTCATGTTTGCGACATGTGTCCAAAAACTTATCGTCAGCGTGGTGATCTTTCCAAGCATCGAAGAACGCAGCACGGTATAGTCAACGGTGGTGATGTTCCTGGCATGGCCAACCCCGCTAAATCACCAAAATTCGCTTCTGCCTTACAATCTTGTCCAAGTGATCGGCGCGATGAGCCGCATCAGCCCCACGATCCTTTCTCGAGCTCAGATCATTTTCCAAGGACGAGTAAGCTTCTTGCAGCTGCGGATCTTCGCGGAGATGCTCGTACCGTTGATACGTGCATCTTGACACCCTGA
Protein Sequence: MLTLILQTQEGHQIELNVQPEDTFSDLKSQFAHHELAGLSDSLQQLITGGASVLENTKIFDFVTGSAQEWLGPNAIAAEPLSSQSSRMDDRSKGCSPRSSDDNQATIPEQSIFPLPADQTRLSDCCVEIGKLDPYNKIFSSEAEECQRFFLNDSRYDQESSILIADHKNQRLRSNELVENRLTKNVLEEEGEKVEKEKEEKSHVTNDIEIDSKNDLDSSKSGESSEHPGILCRLCGKPAVNPIHLYAMKAENIQKHEFSIADKINLCLPVTIAVTDPLPKQICHDCDMKLNVCHDLAVQSLQAEAKLKTLLRKKKLCVEVNAENCPLCIDGSMKMLKRSGIYRKEDWNNISRPLPGSSPKNEENIESERSNDGGAEIKSWDTKVELPVTICHNFVDESTTTKFDSALQSKNSQDDIRFSLAIDRSNGSTNCSKIVDSRERGNTVNGKDRQVNNLIPSRGSVGSKSGEIPVGAFVEAGELQLDESGHELVTVVGKNASSSNNSTGIGCNDCGEILTSEGVLRDHDCSEVKSNDFAMSIGAKYLGESVVRNRKTSKLRNIVETLAENREAKVSAGKVGYSCKFCNGEFTQKTSLEKHTKSLHSDSLKELLQIPKYCWKCKVCCEAFAREKDAETHARENHHSSFITERKEENEENIDCRQSEELLIEQLIVTRLYVCEYCELRFTVPSSVHEHRELEHSPSNGKSRLNKYICTTCNLTFDSHRELTSHKAQRSHRKSLEENLGIKQFYVCKYCDKSFLHHTSHTSHVLQHTRTDPRRPYLCRVCNLNFVNYREISRHRDEAHPYYQLILHERSSFVYNCQYCHKEFSQEVALMKHIRMHTGERPYKCTICAKGFSQSSGLYTHLRVHSDVRPYACTKCSRTFKIKGDCDNHMKKHAGNRPYKCEFCNKAFMTQHVYSQHCKIHTNERPYKCHLCGQAFRRSHVLTVHMRRHTGEKPHVCDMCPKTYRQRGDLSKHRRTQHGIVNGGDVPGMANPAKSPKFASALQSCPSDRRDEPHQPHDPFSSSDHFPRTSKLLAAADLRGDARTVDTCILTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00439746; iTF_00829771;
90% Identity: -
80% Identity: -