Hdol008253.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyposoter dolosus
Gene Symbol
-
Assembly
GCA_963921915.1
Location
OY998133.1:4622111-4624624[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.1e-06 0.0001 22.7 3.9 1 23 323 345 323 345 0.99
2 15 0.0034 0.32 11.7 3.7 1 23 351 374 351 374 0.96
3 15 6.3e-06 0.00059 20.3 1.4 2 23 464 485 463 485 0.97
4 15 1.2e-06 0.00011 22.6 1.2 1 23 491 513 491 513 0.98
5 15 0.0022 0.2 12.3 0.5 1 23 519 541 519 541 0.98
6 15 3e-07 2.9e-05 24.4 0.9 1 23 556 578 556 578 0.98
7 15 5.3e-07 5e-05 23.7 2.4 1 23 584 606 584 606 0.98
8 15 5.1e-06 0.00048 20.6 1.5 1 23 612 634 612 634 0.98
9 15 0.0012 0.11 13.2 0.4 1 23 640 662 640 662 0.99
10 15 1.6e-05 0.0016 19.0 0.3 1 23 668 691 668 691 0.92
11 15 1.6e-05 0.0016 19.0 1.3 1 23 697 719 697 719 0.98
12 15 0.00036 0.034 14.8 4.7 1 23 725 747 725 747 0.98
13 15 8.1e-06 0.00076 19.9 0.4 1 23 753 776 753 776 0.96
14 15 4.3e-06 0.00041 20.8 0.9 1 23 782 804 782 804 0.97
15 15 3.2e-06 0.0003 21.2 4.5 1 23 810 832 810 832 0.99

Sequence Information

Coding Sequence
ATGAACGCAGCGGTAACAGTGGCTAATCAATGGATTCCTTCTAAAGTTTGTCCGGACGAGGACTTGCCAGTTATACATGATGCTCCACTTGGCTCTGTAAAGCGAGAGAATTATTATCCAATGTCTGTGATATACGAGCATTCCAAAATGGAAGCAAGAAGCGAggttgacaatttttccaaagtaaATGTGAACAGAAAGCGAACAGCAATCAACGAAGTGTCTCCGCTGAATCCACCAGTGAGAATAAATCACAGGGCTCAAATAGATGTGATTGACATAGAAGAGGGAGAAAGCAAGGATAGGAAGCACGTTTTGATTTACGAAGAGCAGCAAACGAACTTggtaatattgaaaattttgaaaagtaaCGAAGTTCGCGAAGTAGCGAATCAGTTGGTGGAAATCGTAACGATGATCGGAGCACCGCGAATAATTCAAAGCGGCCATGGCCGCAATCACGCGGAACAAGTGGTGCGAGAAATTCGTTTGATGCTCCGAGACTTTTGTGTCGTACACGGAGATGCATCGAAGAACAGCGAAGATCGACGGGACTTCCGAATCATCTTGAGATCCTGGATGAAAAAACATCCGGGTAGAAGTTTGAACGAAGCTCTTAGGATCGTCCAAGTTATCGAGAATACGACGACGAATTCGCGTCACGGTACGATCCCCAGCCAACTTTTCTTCGGCCGAAATATTTGCGAGGATCTCCGAAGAACTATTGGCACTAAAGGACCACAAGGAAATTCTTTCCTCAAGGTGAACTCTCTCCTAACAGACAAAATCGTGATTACGCCTGACACTGAAAAATCActaacggaaataaaaaacgaccAAGTCTCGGGAACAAATATCTCGTCAGGCGTCGATCTCGTCAGGAACGCAATCTCCTCCAACGCTCAAGGCAATACCAAGAAATTCGACTCTCCAGAAAAAGAGGATCTTCGGGAAACGGAGAAATGTTTCAAATGTGAAATATGCCAGAAAAATTACACGAAATTGGCTCATCTGAGAAACCACATGAGGACACACACCCGGAACAACAATTTCACGTGTTCCATTTGCACAAGGACATTTCGATCGTGCAGTGTTTACGACATGCACATGAAAGAATCTCATAAGCAGGAAATGAGTGAAAACGACGATAGGAATGAAAGCGAATGTGACGATCGTTTGGAGCCTAAATCAGACGAGGAAGATCCAGTGAGTCAGGAAGAAAAAGCTCATTTGATGGAGGCAGAATTGACCGAGCAACCAAAGACCGAAGCGAACTGCAAAAGAACAGTTGCGAGAAGCTTGGCAAGGAAACTCccgaaaaatacaaagacTCGGAAAAAGCGAGCCAGCAGTTTAGCAGGGAACAAATTCACTGACAATTCTCTTCTCGAATGCACGTTTTGCCAGCAAAGTTTCACTTTTCCGAGCGTCTTGAAAAGACACATGCGAAGTCATACGAACGAGAGACCCTACGTTTGTGAAATCTgcaacaaaagtttcaaacaaTTGGGACACTTGAGTCAACATGCACTAACTCACACGGACTACCGATCATTCCGATGCACGATATgtgcaataaaatttgattccCTTGAAAGCCTGAAGCTCCATTCAAACTCTCACGAAGCAGAGACAATTAGtagttcgaaaaaatcgtatcgtCTGTTCGAGTGCGATATTTGCAAAAAGGTATTTACTACCAAAAGCGTATTGGAGCGTCACATATTCACTCACACGCACGAGCGTAAGTTCAGTTGCAAAATATGTGGCAAAAGATTCAAGCAATCTGGTCACGTGAAATCCCATATGCTGGTACACACGGGCGAGCGAAAATTTGAATGTGACATTTGTACGAAACGTTTTAGTCTCTCAAACTCCTTAAAGAAACACATGTACGTTCATAACGGTGATAAGCCTTATCAGTGCGATATTTGCGGCTCGAggtttctggaaaaacgaAATCTTAATGGGCATCTCATGACACATACCAACGAGAAACCATTTTCCTGCAAAATATGTGGCAAGCGTTACACTCTGGCTGACACTCTCAGACGTCACGTGAGCGCGGCTCACGAAGACGGTCGGACGTATCAGTGCGAAATTTGCGCCAAAATGTTCAAGCAACTGGCACACTTGTCGGTACACAAAAAAGTTCACAACGACGAACGACCTTTCCAATGTCATCTgtgcgagaaaaatttcaaacataaAAACGTACTCAAATCTCATCTTGCGATACATGCCAATGTTAGACCCTTCGAATGCGACACTTGCAAAGCAACATTCGTCAGAAAAACTAATCTTCAGACTCACATCGCTTCGGCACATATGAACGAACGTCCGTACGTTTGTACCATTTGCAACAAACGTTTCAAACAAATTAGTCATTTGAATGGCCACATTGTCGTTCATAGCAACTCGATGCCCTATCAATGTGATTTTTGCGATCGTCGATGCAACAGACTCGATAACCTCAAAAAACATATGAGACTCCATACGAAAACCGCGgcgtaa
Protein Sequence
MNAAVTVANQWIPSKVCPDEDLPVIHDAPLGSVKRENYYPMSVIYEHSKMEARSEVDNFSKVNVNRKRTAINEVSPLNPPVRINHRAQIDVIDIEEGESKDRKHVLIYEEQQTNLVILKILKSNEVREVANQLVEIVTMIGAPRIIQSGHGRNHAEQVVREIRLMLRDFCVVHGDASKNSEDRRDFRIILRSWMKKHPGRSLNEALRIVQVIENTTTNSRHGTIPSQLFFGRNICEDLRRTIGTKGPQGNSFLKVNSLLTDKIVITPDTEKSLTEIKNDQVSGTNISSGVDLVRNAISSNAQGNTKKFDSPEKEDLRETEKCFKCEICQKNYTKLAHLRNHMRTHTRNNNFTCSICTRTFRSCSVYDMHMKESHKQEMSENDDRNESECDDRLEPKSDEEDPVSQEEKAHLMEAELTEQPKTEANCKRTVARSLARKLPKNTKTRKKRASSLAGNKFTDNSLLECTFCQQSFTFPSVLKRHMRSHTNERPYVCEICNKSFKQLGHLSQHALTHTDYRSFRCTICAIKFDSLESLKLHSNSHEAETISSSKKSYRLFECDICKKVFTTKSVLERHIFTHTHERKFSCKICGKRFKQSGHVKSHMLVHTGERKFECDICTKRFSLSNSLKKHMYVHNGDKPYQCDICGSRFLEKRNLNGHLMTHTNEKPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDTCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKTAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439662; iTF_00828956;
90% Identity
iTF_00828956;
80% Identity
-