Basic Information

Insect: Hyposoter didymator
Gene Symbol: -
Assembly: None
Location: scaffold351:3469423-3473423[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.002 0.17 12.3 3.5 1 23 323 345 323 345 0.98

2 15 0.0024 0.2 12.1 0.8 1 23 351 374 351 374 0.95

3 15 1.1e-06 9.6e-05 22.5 1.2 2 23 466 487 465 487 0.97

4 15 1.1e-06 9.2e-05 22.6 1.2 1 23 493 515 493 515 0.98

5 15 0.00055 0.047 14.0 0.9 1 23 521 543 521 543 0.98

6 15 1.5e-07 1.3e-05 25.2 0.7 1 23 559 581 559 581 0.98

7 15 3.4e-07 2.9e-05 24.1 2.5 1 23 587 609 587 609 0.98

8 15 3.5e-06 0.0003 20.9 2.0 1 23 615 637 615 637 0.98

9 15 0.0011 0.09 13.1 0.4 1 23 643 665 643 665 0.99

10 15 1.5e-05 0.0013 19.0 0.3 1 23 671 694 671 694 0.92

11 15 1.5e-05 0.0013 19.0 1.3 1 23 700 722 700 722 0.98

12 15 0.00033 0.028 14.8 4.7 1 23 728 750 728 750 0.98

13 15 7.4e-06 0.00063 19.9 0.4 1 23 756 779 756 779 0.96

14 15 3.6e-06 0.0003 20.9 1.2 1 23 785 807 785 807 0.97

15 15 2.9e-06 0.00025 21.2 4.5 1 23 813 835 813 835 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.002	0.17	12.3	3.5	1	23	323	345	323	345	0.98
2	15	0.0024	0.2	12.1	0.8	1	23	351	374	351	374	0.95
3	15	1.1e-06	9.6e-05	22.5	1.2	2	23	466	487	465	487	0.97
4	15	1.1e-06	9.2e-05	22.6	1.2	1	23	493	515	493	515	0.98
5	15	0.00055	0.047	14.0	0.9	1	23	521	543	521	543	0.98
6	15	1.5e-07	1.3e-05	25.2	0.7	1	23	559	581	559	581	0.98
7	15	3.4e-07	2.9e-05	24.1	2.5	1	23	587	609	587	609	0.98
8	15	3.5e-06	0.0003	20.9	2.0	1	23	615	637	615	637	0.98
9	15	0.0011	0.09	13.1	0.4	1	23	643	665	643	665	0.99
10	15	1.5e-05	0.0013	19.0	0.3	1	23	671	694	671	694	0.92
11	15	1.5e-05	0.0013	19.0	1.3	1	23	700	722	700	722	0.98
12	15	0.00033	0.028	14.8	4.7	1	23	728	750	728	750	0.98
13	15	7.4e-06	0.00063	19.9	0.4	1	23	756	779	756	779	0.96
14	15	3.6e-06	0.0003	20.9	1.2	1	23	785	807	785	807	0.97
15	15	2.9e-06	0.00025	21.2	4.5	1	23	813	835	813	835	0.99

Sequence Information

Coding Sequence: ATGGACGTAGCGGCAACACCGGCTACTCAATGGATTCCTTTGAAAGTTTGTCCGGACGAGGACTCGCCAGTTGTGCGTGACGCTCTCCTCGGCTCTGCGAAGCGAGAGAATTATTATCCAACGTCTGTGATATACGAGCGTTCCAAAATGGAAGCAAGAAGCGAGGTTGACAATTTGTCCGAAGCGAATGTCAACAGGAAAGGAGCAGCGATTAACGAAGCGTCTCCGCCGAATCCACCGGTGAGAATAAATCACAGGGCTCAAATAGATGTGATAGACATAGAAGAAGGAGAAAGCAAGGATCGGAAGCCCGTATTGATTTACGAAGAGCAGCAAACGAACTTGGTAATATTGAAAATTCTGAAAAGTAAGCAAGTTCGGGAAGTAGCTAATGAGTTGGTGGAAATCGTAACGACGATCGGAGCACCACGAATAATCCAAAGCGGCCACGGTCGCAATCACGCGGAACAAGTGGTGCGTGAAATTCGTTTGATGCTCCGAGACTTTTGTGTCGTACACGGAGATGCATCCAAGAACAACCACGATCGGCGAGACTTTCGGATTATCTTGAGATCCTGGATGAAAAATCATCCGGGTAGAAGTTTGAACGAGGCTCTTAGGATCGTCCAAGTTATCGAGAATACGACGACCAATTCGCGTCACGGTACGATCCCCAGCCAACTTTTCTTCGGCCGAAATATTTGCGAGGATCTCCGAAGAACTATTGGTACTAAAGGACCACAGAGAAATTCTTTCTTCAAGGTGAATTCTCTCCTTACCGACAAAATCGTAATCACGCCTGAGACTGAAAAATCTGTAACGGAAATAAAAAACGACAAAGTCTCGGAAACAAATATCTCGTCAGGCCTCGATCTCGTCAGCGGTGCAATCTCCTCGAATGTTGAAGGAAATACCAAGAATCATGACTCTCCAGAAAAAGAGGATCTTCGGGAAATGGAGAAATGTTTCGAATGCGAAATATGCCAGAAAAATCACACGAAATTAGCTCATCTGAGAAATCACATGAGGGCACACACCCGTAACAATAATTTCACGTGTTCCATATGCAACCAGACATTTCGATCGGGCAGTGTTTACGACATGCACATGAAAGAGTCTCACGAGCAGCAGGAAATGAGTGAAAAGGATGATGGGAATGAGAGCGAATATGAGGATCGTTTGGAGCCGAAATCCGAGGAGGAAAATCCAGTGAGCCAAGAAGAAAAAGCTCATTCGCTGGTGGCAGAATTGAGCGAGCAACCAAAGAGCAAAGGAAACTGCAAAAGAAGAGTTGCGAGAAGCTTGGGAGCAAGGAAACTCCCGAAAAATACGAAAACTCGTAAAAAGCGATGCAGCAGCTTAGCAAGGAACAAGTTGACTGACAATTCTCTTCTCGAATGCACGTATTGTCAGCAAAGTTTCACTTTTCCAAGCGTCTTGAAACGACACATGCGAAGTCATACGAACGAGAGACCCTACGTTTGTGAAATCTGCAACAAAAGTTTCAAACAATTGGGACACTTGAGTCAACATGCTCTGACTCACACGGACTACCGATCATTCCGATGCACGATATGTTCCATAAAATTCGATTCCCTAGAAAGTCTCAAGCTTCATTCAAACTCTCACGAAACAGAGCAGACAATTAGCCGTTGGAAAAAATCGTATCGGCTCTTCGAATGCGATATTTGCAACAAGGTATTTACTACCAAAAGCGTTTTGGAGCGTCACATATTCACGCACACGCACGAGCGTAAGTTCAGTTGCAAAATATGTGGCAAAAGGTTCAAGCAATCTGGTCACGTGAAAAACCATATGCTGGTGCACACGGGCGAGCGAAAATTTCAATGTGACATTTGTACAAAACGTTTTAGTCTCTCCAACTCTTTAAAGAAACACATGTACGTGCATAACGGTGATAAGCCTTATCAGTGCGATATTTGCGGCTCGAGGTTTCTGGAAAAGCGAAATCTCAACGGGCATCTCATGACACATACCAACGAGAAACCATTTTCCTGTAAAATATGTGGCAAGCGCTACACTCTTGCTGACACTCTGAGACGTCACGTGAGCGCGGCTCACCAAGACGGTCGGACGTATCAGTGCGAAATTTGCGCCAAAATGTTCAAGCAACTCGCACACTTGTCGGTCCACAAAAAAGTTCACAACGACGAACGACCTTTCCAATGTCATCTGTGCGAGAAAAACTTCAAACATAAAAACGTACTAAAATCTCATCTTGCGATACACGCCAATGTTAGACCCTTCGAATGCGACACTTGCAAAGCAACTTTCGTCAGAAAAACTAATCTTCAGACTCACATCGCTTCGGCACACATGAACGAACGTCCGTACGTTTGTACCATTTGCAACAAACGCTTCAAACAAATGAGCCATTTGAATGGCCACATTGTCGTTCATACCAACTCGATGCCCTATCAATGTGATTTTTGCGATCGTCGATGCAACAGACTCGATAACCTCAAAAAACATATGAGACTGCATACGAAAACTTCGGTGTAA
Protein Sequence: MDVAATPATQWIPLKVCPDEDSPVVRDALLGSAKRENYYPTSVIYERSKMEARSEVDNLSEANVNRKGAAINEASPPNPPVRINHRAQIDVIDIEEGESKDRKPVLIYEEQQTNLVILKILKSKQVREVANELVEIVTTIGAPRIIQSGHGRNHAEQVVREIRLMLRDFCVVHGDASKNNHDRRDFRIILRSWMKNHPGRSLNEALRIVQVIENTTTNSRHGTIPSQLFFGRNICEDLRRTIGTKGPQRNSFFKVNSLLTDKIVITPETEKSVTEIKNDKVSETNISSGLDLVSGAISSNVEGNTKNHDSPEKEDLREMEKCFECEICQKNHTKLAHLRNHMRAHTRNNNFTCSICNQTFRSGSVYDMHMKESHEQQEMSEKDDGNESEYEDRLEPKSEEENPVSQEEKAHSLVAELSEQPKSKGNCKRRVARSLGARKLPKNTKTRKKRCSSLARNKLTDNSLLECTYCQQSFTFPSVLKRHMRSHTNERPYVCEICNKSFKQLGHLSQHALTHTDYRSFRCTICSIKFDSLESLKLHSNSHETEQTISRWKKSYRLFECDICNKVFTTKSVLERHIFTHTHERKFSCKICGKRFKQSGHVKNHMLVHTGERKFQCDICTKRFSLSNSLKKHMYVHNGDKPYQCDICGSRFLEKRNLNGHLMTHTNEKPFSCKICGKRYTLADTLRRHVSAAHQDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDTCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQMSHLNGHIVVHTNSMPYQCDFCDRRCNRLDNLKKHMRLHTKTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00829700;
90% Identity: iTF_00829700;
80% Identity: -