Hkah003254.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003589595.1
- Location
- NW:23017829-23052436[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 3.7e+03 -3.5 0.1 266 283 90 107 74 109 0.60 2 3 3.3e-75 4.3e-71 239.2 28.2 1 295 123 409 123 414 0.86 3 3 0.095 1.3e+03 -2.0 10.8 118 170 424 476 417 486 0.82
Sequence Information
- Coding Sequence
- ATGGGTAGGCCGACAAAATTCGGGACTCCAGACAATACTGATAGTGAGGAGAGCGGTGAGGTTTTCACCGACGGCGATTTCGACGATAGCGACGAAGATCCCGTCAATCGTGATGACAATGATACTTCTCTTACAGTCAATGAAACCATCAACATGGACGTAAAGAACACTGATGTGGAAACGTACGATAACCTTAATGATAATGGTTTTGGGCAAGTAAACGGTGATGAGTCGAAGGTGAACGGACTTAATAATGGACATGTTAGTGATTCGGAGAATTACAACAGTTTGATGGATTTGCGAAGAGACTCTAACAGTGAACTAAATCCGTCTATAGTCGGAATCCTCGGTGGTCAACAAAATTATGCAGAGCAGCGCCTTGCAGCGCGGCGAGCGGCGCGGGCGGAAGCGCGCGAGATACGCATGCGCGAGCTTGAGCGACAGCAACGGGAACAGGAAGACCATGCTAACAAAGCTTATGATATGTACTCAGAGACGGTGGGTCGTCGGGGCTCGCGTATGACGGCCTCGTCGCTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCATCGATGACTCCTTGAACATAAAGGATCTTAGGCATGAATTGAAAGAAGTAGAGGAGAAATTCCGCAAGGCAATGATCCTGAACGCGCAGCTAGACAACGACAAGGCGGCGCTGGGGTATCAGCTCGAGCTGCTCAAAGACCGGATAGAGGAGCTGCACGAGGAGCACGCGCAACTACAGAGGGAACATAGAGAAAAATGTTCATCACACGAGCGTTTAAAACGCGAGCACGCATCGCTAGAGCGCGAATTAAACGCGGCGCGTGACGCGGTTAGGGCGCGGGACGCCGCCGCAGCCGCAGCGGGGTTCGCCTTTGTGGAGGCCGCGATCGCAGCGAACGGGGAGGGAGAGGGGGGCGAAGGCGACACGAAAGTCGCGCAAGGGTTCGGCTCTGTGCCACCGTTAGCGCTCGTGTCGCATCAGTCGGAGCAGTTGCTGCTGGATGCTGGGGAAGGCACGCTGGACGTGCGGTTGCAGAAGCTGGTGTCGTCGCGCGCTGCTCTGGAGTCGGAGGTGCGTAAGCTGAAGCTGCAGCTCAACGAAGAACGTTCCGCCAGACACAACGGCGTCGCCAACCACCACGATCAGGAGTATGAAAATGAATTGGAGAGTCTCCGCAAGTCAGTCGCCGAGGCGAAGGGGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGGCGCGGCCGTGGCCCGGCTCGAGGCGCAGGTGGCCCGCCTCAAGGCGCGCCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAGCAGGAGCGCCGCAGGCTGCAACGAGAGgCACGCGAGGCACTCAACCGAGTGGAAGAGCTAGAAACAGAGAACAGTCACCTAACGAAGCGCCTGGATAAACTGAAGAACGCAAAGTCAGCGCTGCTCAAAGACCTGTGA
- Protein Sequence
- MGRPTKFGTPDNTDSEESGEVFTDGDFDDSDEDPVNRDDNDTSLTVNETINMDVKNTDVETYDNLNDNGFGQVNGDESKVNGLNNGHVSDSENYNSLMDLRRDSNSELNPSIVGILGGQQNYAEQRLAARRAARAEAREIRMRELERQQREQEDHANKAYDMYSETVGRRGSRMTASSLHSPRRSSEDSIDDSLNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHREKCSSHERLKREHASLERELNAARDAVRARDAAAAAAGFAFVEAAIAANGEGEGGEGDTKVAQGFGSVPPLALVSHQSEQLLLDAGEGTLDVRLQKLVSSRAALESEVRKLKLQLNEERSARHNGVANHHDQEYENELESLRKSVAEAKGRAARAEAEAALQGAAVARLEAQVARLKARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -