Hkah007655.1
Basic Information
- Insect
- Hyposmocoma kahamanoa
- Gene Symbol
- sip1
- Assembly
- GCA_003589595.1
- Location
- NW:2642527-2664261[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-17 3e-13 49.5 0.1 3 97 367 447 365 457 0.90 2 2 1.2e-20 1.5e-16 60.4 0.0 174 275 469 570 463 570 0.94
Sequence Information
- Coding Sequence
- ATGTCAGACGACGAAGTAATACGATTTGAGATCACTGACAATGATTTGGACGACGAATTTAATCCAAACAGAAATAGAAGGGCCAAAAAGGAGTTCCAGATTTATGGTGTATGGGCCAAAGACAGTGATGATGATGAGAACGAAGATAACATTAGACAGAGAGTTCGGAAACCAAAAGACTATTCAGCCCCAATTGGTTTTGTTGCTGGCGGGGTGCAGCAGGCGGGGAAGAAGAAAAACGAGAAAAAAGaGCTCCAATCAACTGAGCCCTCAACTTCTAAACCAATCATAGTAGATAGTTCAGATGAAGATGATGCAAATCAACCGAATGAGAGTGAAACAGCTGGCATACGTAGATCCGGTATGGGGATGAAATCGGCCAATATTGGTGGCAATATGGGAACTTGGGAGAAACATACCAAGGGGATTGGTGCTAAATTGTTGCTTCAGATGGGCTACCAACCTGGCAAAGGTCTGGGTAAAGACTTACAAGGTATATCAGCACCTGTTGAAGCCACCATCAGGAAAGGCCGAGGGGCCATTGGCGCTTATGGACCTGAGAAAGCCGCTCTGAAAGCCAAAAAAGAAGAAGAGAaacgtttaaaagaaaaagaggaaCAAGAGAAGGGGAAACAAGAGAAGACCTATAATTGGAAAAAGTGTCATAAAGGACGTTATTTCTACCGAGACGCTGCCGATGTCATCTTGGAGGGTAAACCGTCTATGCACACAGTTTCAAGTAGCGAACTTTCCCGGGTGCCGGTCATTGACATGACTGGCAAGCAAAAACGAGTCCTTAGCGGGTATCACGCACTTCGCGCTACCGCGCCAAGGTTCGAACACGAACAAAGGCGGGATTGTCGAAACTTCGCAGCGCCCGAGCTTGCTAGGAACCTGGATGCTATGCTCGAGTGCTGTGAACAGGATATTATTCAAAACGCTCGCGAACTTCAACAAGCAGAAGACGAGATTGTGGTCCTGGAACGTGATTTAGAAGAAGGTAGTAAGAAGCTGCGAGAACACGACGTGGTGGTCGGTAAGGTGCAGGATATTCTGCAAAGAGTTGAGGAATTGAACAAGCCTGATATTTCTTTGGAGACTGCTTACGAGGTCCTGGCCGATTTGAAGGAATCGTACCCACTGGAGTATGAGATGTTCGGCCTAGGCACAATCGCGGCGAACATCGTCAGCCCCCTCATGAGTGCGTTGTTAGCCGCCTGGGAGCCTTTGCAGAACCCCGAAGAGCCTATTCCAATATTTTTGAAGTGGAAGAAGCTTTTGACCGACGACGCCTATAATACCTTGCTTTGGCAACATTATGTGCCCAGTTTGACGGCGGCCGCTGAGTGTGCTAAACCTTCTATTTATAACGGAATaggaaaaggaggagGTGATGCCCTAGCAAGTACAGTGTACCCTCTAATCCGGTCCCGCCTAGCGACGGCCCTGACCGCGTGGCACCCTGCGGACGGATCTGCACGGCCGCTGCTGGCCGCCTGGAAAGACGCCTGGGGCGGCGCCCTGACCGCCATGCTGCATCAGCACATTGTGCCTAAGCTGGAACATTGCTTGCAGACTGCACCTCTAGAACTTGTTGGGAGAGAGAACACGGCGTGGCTGTGGTGCGTGGACTGGCTGGCGCTGCTGGGCGCGCCCACGGTGGCGGCGGTGGCGGCGCGCGCGCTGCTGCCGCGCTGGCTGGCGGCGCTGGCCGCGTGGCTCAACGCCGCGCCGCCGCACGCCACCGTGCTCAACTCCTACACGCAGTTCAAGaaaATGTTTCCTGAAGAAGTCCTCAAAGAACCAGCCGTACGAGACGCTTTCAGAAAGGCTTTGGACATGATGAATCGAAGTACCGACATCGATTCGATCGAGGCCCCACCGCCGCCACGCTTCACCATAACGGACACCAAGGAGACCTCAAAAATATCAGAAATATTGGCCACTACAACTCAACACAAGAGTTTTTCAGAATTATTGGAGTCTAAATGCATTGAAAAGGGAATTACATTCGTACCAATTCCCGGCAAGAGCAGGGAAGGCAGGCCGTTGTACAAAATCGGAGAATTGCAATGTTATGTTATAAGGAATGTTATAATGTTTTCTAATGACGGCGGTAGGACTTTTTTGCCTATTGGTTTAGAGAAACTTTTGAGTATGGTAGAAGATTAA
- Protein Sequence
- MSDDEVIRFEITDNDLDDEFNPNRNRRAKKEFQIYGVWAKDSDDDENEDNIRQRVRKPKDYSAPIGFVAGGVQQAGKKKNEKKELQSTEPSTSKPIIVDSSDEDDANQPNESETAGIRRSGMGMKSANIGGNMGTWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATIRKGRGAIGAYGPEKAALKAKKEEEKRLKEKEEQEKGKQEKTYNWKKCHKGRYFYRDAADVILEGKPSMHTVSSSELSRVPVIDMTGKQKRVLSGYHALRATAPRFEHEQRRDCRNFAAPELARNLDAMLECCEQDIIQNARELQQAEDEIVVLERDLEEGSKKLREHDVVVGKVQDILQRVEELNKPDISLETAYEVLADLKESYPLEYEMFGLGTIAANIVSPLMSALLAAWEPLQNPEEPIPIFLKWKKLLTDDAYNTLLWQHYVPSLTAAAECAKPSIYNGIGKGGGDALASTVYPLIRSRLATALTAWHPADGSARPLLAAWKDAWGGALTAMLHQHIVPKLEHCLQTAPLELVGRENTAWLWCVDWLALLGAPTVAAVAARALLPRWLAALAAWLNAAPPHATVLNSYTQFKKMFPEEVLKEPAVRDAFRKALDMMNRSTDIDSIEAPPPPRFTITDTKETSKISEILATTTQHKSFSELLESKCIEKGITFVPIPGKSREGRPLYKIGELQCYVIRNVIMFSNDGGRTFLPIGLEKLLSMVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -