Hpun042047.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438822.1:10540220-10542436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.29 31 6.6 2.0 3 23 55 75 53 75 0.97 2 16 5.4 5.8e+02 2.6 0.1 2 23 102 124 101 124 0.89 3 16 0.00019 0.021 16.6 0.5 1 23 145 167 145 167 0.95 4 16 0.005 0.54 12.2 0.3 1 23 171 193 171 193 0.96 5 16 2.9 3.1e+02 3.5 0.2 2 23 282 304 281 304 0.93 6 16 0.26 28 6.8 0.8 1 23 325 349 325 349 0.95 7 16 0.052 5.6 9.0 1.2 1 23 353 376 353 376 0.96 8 16 1.7 1.9e+02 4.2 0.1 2 12 473 483 472 486 0.88 9 16 0.65 71 5.5 1.2 1 23 516 538 516 538 0.95 10 16 0.045 4.9 9.2 2.2 2 20 543 561 542 564 0.92 11 16 0.0018 0.2 13.5 2.0 1 23 571 594 571 594 0.95 12 16 0.00099 0.11 14.4 0.6 1 23 599 622 599 622 0.98 13 16 0.00054 0.059 15.2 1.7 1 23 628 651 628 651 0.97 14 16 1 1.1e+02 4.9 3.5 1 23 657 679 657 679 0.97 15 16 2.2e-06 0.00024 22.7 0.4 1 23 686 708 686 708 0.99 16 16 4.7e-05 0.0052 18.5 0.8 1 23 714 736 714 737 0.95
Sequence Information
- Coding Sequence
- ATGGCTTGTAAAAATCAACTgacgtcgtattttcttttgtttatagACCCTGGCCAATGGAGACCGAAACTGGGCGACTATCGTGACGGGCGCGACAATGCAACCATTATACTAGGGTGTTCCAACGTCCTCCCCTTCAAATGGCGTCGAAACGTGTTCGGCTGTCCGAGCTGTGACTTCACCTCGCCCGATTTCACATGCCTCAAAAACCATATGACAAATCATTCGGTCAAATCAAATAAACTCGATGTTCTTAAGAAGTCCCGCCGAGGCGATCCCATCAAAATCGACGTTGCGGACCTTAAATGCGATCTGTGTGAGCGAGAAATTGACGACATACCGGCACTAATGAACCATTTACACGACTTTCACAAAAAACCCATCGTGAAAAATTTCGATTCGGGCCTCGTTCCTTATTTGCTAGGAAATGGATTTGTTTGCGCGTACTGCGGCAAAGCATTCGATCGGTTCGTTACTTTAAATACGCACGTGTTTAACCATATGCCTAAGTACGCTTGCTCTGAATGTGGCCTACTTTTCTCTGCGGACAGACTTAAAAAACACATGCTTCGAAATCACGATAAAACTCGCGAAATAAAATTCAAGCCAAAATCAGGCGAATACGACGTTCGACATAACACCGCTCTCATCTTGGAGTTTTCTAACATCTGCCCTTTCAAATGGCAACGAAATGTTTATGCTTGCGCCTGCTGCGCTTTCACTTCCGCAGAATTTATTGATTTGAGAATGCATATGAGTGCCCACCCCGTTAAGCCAGAGAAACTCGAAATACTTCGTCATTTGCTACCAAACGACATTGTCAAAGCTGATATCACCGATTTGAAGTGTGAATTGTGCCAACTAAAtatagaaaatatacaaaaactaatGACTCACCTGAAAGAAGACCACGATAAGcctattttaaaacaatttggctCGGGTATAATACCCTATTTTCTAAGGGACGGATTTAAATGCGCCTACGGTTCCTGCAACGAATTGTTTGATTCTTTTAACAAACTAAACATGCATATAAAATCTCACAATATTAAGTACACTTGTGCACAATGTGGACAATATTTTACTAGTGGGAAAAGGATGAATACCCATTTAATTCGGAAGCACGGGCAATCTCAACTTTCAAAATTGAGATCCGAATGTGAAAAACTCAAACCTGGAATGAGAACCAAATTCAGTCTATACGACGATGCCAGGGCTAATGCAGCCATAATCCTGGAATTTTCCAACGCATGTCTGTTTAAGTGGCACCGAAATGTATTCGGATGTGCCACGTGTGATTATACTGCAGCGGACTTCGGGCTGTTTAGATCTCATGTTGAAACTAAATGTAAAGGCCTGCAATTGCGCTACTCTCGGCTCACGGACTTGCTGAAGGCTGAAGTCACAGATCTCAAATGCAAGCTCTGTGATGAGGCTTTCTACGAtcttaaaatattactttgcCATTTAGGCGAGATACATAATAAACCGATAAAAGTGGAGCACGACACTGGACTCATTCCTTACCTGTTGAGTTCCGGCTTCATTTGCGCCTACTGTGGAGTTCAATTCGATGGCTTCACAAAACTAAATTGTCACATGAATGAGCATTTTCCCAATTGCGTTTGCTCCTATTGCGGCCAAGGTTTCACCAGCGAGACCAGGTTAAAATACCACACCTGGCAGCATAAACGCAGAATGGAGAGTTTCAAATGCTCCGTGTGCAAAGAGAATTTTGCAACAAGACACCTGAAGCAAAAACATATGATAGCTGAACATGGCAAGCTTACCTACAAATGTCCTTACTGCAGCGAGATGTTCAAGTCTTACCCACTCAGAGTGCAGCATTTGAACACGGAGCACGGCAAGAAGATAGATTATCCTTGCAAACATTGCTCGGAGGTATTCAAAACGTCTGCCAAACGTGGAAAACATATCCGGAGTGTTCACAGGAAAAACGAACTTCACTATTGCTCCGTTTGTAATTACACGTGTTTGACTGCAGCTAGATTAGGAAAGCATATGTTAAAACACGGTAGCACTGAAAGGAACTACAAATGCGACATCTGTTTCAAGGCATACCCGAGGAGGAGCGCATTGTCTCTACATATGCGTATACACGACAATGACAATCGGTTTATTTGTGTGTACTGTGGCGCCGCGTTCGTGCAGATATCTAGTTTGAAAAGTCACACCAAGACTCACCATCCTTAA
- Protein Sequence
- MACKNQLTSYFLLFIDPGQWRPKLGDYRDGRDNATIILGCSNVLPFKWRRNVFGCPSCDFTSPDFTCLKNHMTNHSVKSNKLDVLKKSRRGDPIKIDVADLKCDLCEREIDDIPALMNHLHDFHKKPIVKNFDSGLVPYLLGNGFVCAYCGKAFDRFVTLNTHVFNHMPKYACSECGLLFSADRLKKHMLRNHDKTREIKFKPKSGEYDVRHNTALILEFSNICPFKWQRNVYACACCAFTSAEFIDLRMHMSAHPVKPEKLEILRHLLPNDIVKADITDLKCELCQLNIENIQKLMTHLKEDHDKPILKQFGSGIIPYFLRDGFKCAYGSCNELFDSFNKLNMHIKSHNIKYTCAQCGQYFTSGKRMNTHLIRKHGQSQLSKLRSECEKLKPGMRTKFSLYDDARANAAIILEFSNACLFKWHRNVFGCATCDYTAADFGLFRSHVETKCKGLQLRYSRLTDLLKAEVTDLKCKLCDEAFYDLKILLCHLGEIHNKPIKVEHDTGLIPYLLSSGFICAYCGVQFDGFTKLNCHMNEHFPNCVCSYCGQGFTSETRLKYHTWQHKRRMESFKCSVCKENFATRHLKQKHMIAEHGKLTYKCPYCSEMFKSYPLRVQHLNTEHGKKIDYPCKHCSEVFKTSAKRGKHIRSVHRKNELHYCSVCNYTCLTAARLGKHMLKHGSTERNYKCDICFKAYPRRSALSLHMRIHDNDNRFICVYCGAAFVQISSLKSHTKTHHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826176;
- 90% Identity
- -
- 80% Identity
- -