Hato037278.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023310.1:4902381-4904444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.28 25 6.7 2.0 3 23 32 52 30 52 0.97 2 15 7.6 6.9e+02 2.2 0.1 2 23 79 101 78 101 0.89 3 15 0.00018 0.017 16.7 0.5 1 23 122 144 122 144 0.95 4 15 0.00046 0.042 15.5 0.5 1 23 148 170 148 170 0.96 5 15 0.025 2.3 10.0 0.6 2 23 259 281 258 281 0.94 6 15 0.38 35 6.3 3.0 1 21 302 324 302 326 0.94 7 15 0.0032 0.3 12.8 1.8 1 23 330 353 330 353 0.97 8 15 4.5 4.1e+02 2.9 0.1 3 22 407 426 405 426 0.93 9 15 0.73 66 5.4 0.1 2 12 450 460 449 464 0.88 10 15 0.0035 0.32 12.7 1.2 2 23 520 541 519 541 0.95 11 15 0.0012 0.11 14.1 1.7 1 23 548 571 548 571 0.95 12 15 0.00095 0.087 14.5 0.4 1 23 576 599 576 599 0.93 13 15 0.0012 0.11 14.2 2.3 1 23 605 628 605 628 0.97 14 15 1.2 1.1e+02 4.8 3.7 1 23 634 656 634 656 0.97 15 15 1.3e-06 0.00012 23.5 0.4 1 23 663 685 663 685 0.99
Sequence Information
- Coding Sequence
- ATGGGCGACTATCGTGACGGGCGCGACAATGCAACCATTATCCTTGGGTGTTCCAACGTTCTACCTTTTAAATGGTGCCGAAACGTGTTCGGCTGTCCGAGCTGTGATTTCACTTCGCCCGATTTCACATGCCTCAAAAATCATATGACAAATCACTCGGTCAAATCAAATAAACTCGATATTCTTAAGAATTCCCGAAGAGGCGAGCTTATCAAAATCGACGTCGCGGACCTTAAATGCGATCTGTGTGAGCGAGAAATCGACGATGTCCCAGCACTAATGGACCATTTACACGAATTCCACAAAAAACCCATCGTGAAAAATTTCGATTCGGGTATCGTTCCTTACTTGCTCGGGAATGGCTTTGTTTGTGCGTACTGCGGCAAGGCGTTCGATCGGTTCGTTACGTTAAACACGCACGTATTTAACCACATGCCCAAGTACGCTTGCTCCGAATGTGGGCTACGTTTTTCTGCGGACAGACTTAAAAAGCACATGCTTCGAAATCACGATAAAAGTCGCGAAATAAAATTCAAGCCAAAATCAGGTGAATATGACGTTCGACATAACACCGCTCTCATCTTGGAGTTTTCTAACATCTGCCCTTTCAAATGGCAACGGAATGTGTATGCTTGCGCCTGCTGCGCTTTTACTACTGCAGAATTTATTGATTTGAAAATGCATATGAGTACCCACCCCATTAAGTCAGAGAGAATTGAAATACTTCGCCATTCGTTATCAACTGCCATTGTTAAAGCTGATGTCACCGATCTGAAATGTGAATTGTGCCAACAAAATTtcgaaaatatacaaaaactaatgaCTCACCTGAAAGACGACCACGATAAAcctattttaaaacaatttgacTCTGGTATAATACCCTATTTTCTCAGGGACGGATTCAAATGCGCTTACGGTACCTGTAACGAATCGTTCGATTCTTTTAACAAACTAAACATGCATATAAAATGTCACAATATTAAGTACACTTGTGCACAATGTGGCCAATATTTTACCAATAGTAAGAGGATGAATACTCATTTAATTCGTAAACACGGACAATCGCAACTTACAAAATTGAGATCCGAATGCGATAAACCCAAACCTGGATTGAGAACTAAATTTAGTTTATATGACGATGCCAGGGCCAACGCGGCCATAATCCTGGAATTTTCTAACGCATGTCTATTTAAGTGGCACCGAAATGTATACGGATGTGCCACTTGTGATTATACTGCAGCGGACTTCGGGCTGTTTAGATCACATGTTAAGACTAAATGTGAAGGCGTGCAATTGCCCTACTCGCGGCTCACCGACTTGCTGAAGGTTGAAGTCACAGATCTTAAATGCAAGCTCTGTGATGAGACTTTCTACGatctaaaaatattactttgccATTTGGGTGAGATACATAATAAACCAATAAAGGTAGAACACGGCACTGGACTAATTCCTTACCTGTTGAGTTTTGGCTACAAGTGCGCTTGTTGTGGAGTCCAATTCGATCGCTTCACAAAACTAAATTGCCATATTAATGAGCATTTTCCCAATTGTGTTTGCTCCTATTGCGGCCAAGGTTTCACCAGCGAGATCAGATTAAAAATTCATACATTGCAGCATAAACGAAGAAAGGAGAATTTCAAATGCTCCGTTTGCAAAGAGAATTTTGCAACAAGGCATCTGACACAAAAACATATGATAGCCGAACATGGCAAGTTTGCCTACAAATGTCCCTACTGtaacgaggtgtttaaatcttaCCCACTTAGGGTACAGCACTTGAATGAAGAGCATGGCAAAAAGATAGAGTATCCTTGCAAGCATTGCtcagaaatatttaaaacgTCTGGCAAACGTTCACGACATGTCCGCAGTGTTCACAGGAAAAACGAACTCCACTACTGCTCCATTTGTAACTACAGGTGCTTGACCGCAGCCAGATTAGGAAAACACATGTTAAAACATGGTAGCACTGAGAGCAACTACAAATGTGACATCTGCTTCAAGGCTTACCCAAGAAAGAGCGCATTGTCTTTACATATGCGAATACACGAAAACTAA
- Protein Sequence
- MGDYRDGRDNATIILGCSNVLPFKWCRNVFGCPSCDFTSPDFTCLKNHMTNHSVKSNKLDILKNSRRGELIKIDVADLKCDLCEREIDDVPALMDHLHEFHKKPIVKNFDSGIVPYLLGNGFVCAYCGKAFDRFVTLNTHVFNHMPKYACSECGLRFSADRLKKHMLRNHDKSREIKFKPKSGEYDVRHNTALILEFSNICPFKWQRNVYACACCAFTTAEFIDLKMHMSTHPIKSERIEILRHSLSTAIVKADVTDLKCELCQQNFENIQKLMTHLKDDHDKPILKQFDSGIIPYFLRDGFKCAYGTCNESFDSFNKLNMHIKCHNIKYTCAQCGQYFTNSKRMNTHLIRKHGQSQLTKLRSECDKPKPGLRTKFSLYDDARANAAIILEFSNACLFKWHRNVYGCATCDYTAADFGLFRSHVKTKCEGVQLPYSRLTDLLKVEVTDLKCKLCDETFYDLKILLCHLGEIHNKPIKVEHGTGLIPYLLSFGYKCACCGVQFDRFTKLNCHINEHFPNCVCSYCGQGFTSEIRLKIHTLQHKRRKENFKCSVCKENFATRHLTQKHMIAEHGKFAYKCPYCNEVFKSYPLRVQHLNEEHGKKIEYPCKHCSEIFKTSGKRSRHVRSVHRKNELHYCSICNYRCLTAARLGKHMLKHGSTESNYKCDICFKAYPRKSALSLHMRIHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827381; iTF_00827352;
- 90% Identity
- iTF_00827381;
- 80% Identity
- -