Hpun039247.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438820.1:11298844-11302724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-06 0.0002 23.0 0.5 3 23 274 294 272 294 0.97 2 12 5.5 6e+02 2.6 0.4 5 14 340 349 338 353 0.84 3 12 0.00013 0.014 17.2 1.7 1 23 367 390 367 390 0.96 4 12 0.0012 0.13 14.1 2.6 1 23 394 416 394 416 0.98 5 12 0.0015 0.16 13.8 0.3 2 23 435 457 434 457 0.93 6 12 0.00056 0.061 15.2 1.2 1 23 461 484 461 484 0.98 7 12 0.0031 0.34 12.8 0.6 2 23 507 529 506 529 0.90 8 12 2.9e-05 0.0032 19.2 5.0 1 23 539 561 539 562 0.96 9 12 0.0069 0.76 11.7 1.0 3 23 579 599 578 599 0.98 10 12 0.0016 0.18 13.7 0.9 1 23 605 627 605 627 0.96 11 12 0.098 11 8.1 2.9 1 22 633 654 633 657 0.90 12 12 0.013 1.4 10.9 0.0 3 23 710 730 708 730 0.97
Sequence Information
- Coding Sequence
- ATGGACGCAAACATATCCCTCCAAGACACTACCGAAGACATACTCATCAAAGAAGAGTTCAATCCCCACATAGAAGAAAACATAGACGTAAAAACTGAAACGGAATACATAGAAAATCCAGATAAACCTGATTCCTTTGATGTTGATATCACAGAGAATAACTACACAAATGTTGAATTGCAAATTAAAAATGAGTTATCTATAAACATACAGCCAGAAGATTCTCAAAGCAGTGCTGAAGCAAACAACTTTAAAAATGAGGTTGAAACTGAGACGATTTTGCCGAGTAGTCCTAATTACAATGAGATAAAGTTTGAAATGCCTGTAGAAGACACCAATGAGGTGACATATGATTATCCAAATTATGATGATAGTATGGATAGCAGCGAGGCAGCGGCGCTAAGTCAAGTTGAGGTGTGTTTGAGTGATGGAGTTAGTATCAAGTCTGAGAATGCTTATGAgGATACCTCAAAAGACTTCCCAAGAATCATCAAAAATGAATCAGAACTAACGGTTACAGAAACACATCTAATCTCCAATAAATTCATCAATACAACATCTACCATCACCAGCACTCATGGAGGTATCATCGGCTCTCAGACAACCAAGACCTTGATCATGGAAATACACCCCATGAATCTAGAGAACCAGAATTTGAAGATGGGCAACCCTGAGGAAATCCTTCCAACCAGCAACGAAACCTATGAGACAGACGAGCCCTTTCAACTAAACTCCATCACTGGCAACATCCTATCCTTAGAACAGGAAGCATACGGCTTgctaaagaagaaaaaaacaacACCCATAATGGAAATAGCCTGTCCGAAGTGCCCTAAAGTTTTCTATCAGAAATTTACCCTTACCAGACATTTAAAAGTTCATACGTCGATTGAAAACAGAGCGAACGGAGTTCTCAAAGGTTTGAAAACTAGGTTGGAGAAAAAGAAGGttaaagaagaagaagttgtaAAAATGGAGTTGCCAGTAAAGAAGGAAGAAAAGGGAGGCTATCATTGTACTTGcggcaaaagttttcaacggagaAGTCGAATGGAGACCTGCCTAAGATCGCACACTGATTATGCCGACTCCAGTTCATACGACTGCGCGACTTGCGataaaaaattcaaatcaaaaGAGCTGTTAATATACCACCGACAACGGCAACACCGTAAAAAGTTTCCGTGCAAATTCTGCCCGACCGACTACCACACGCAAAAAGCACTCTTCAAACATTTACGAATACATCAGAAAGTCCAATTAACTGAATACAAAATAATAGCAGAAGGTAATCAGGATCTCCAGTGCCTGTTATGCGAAAAAACCTACAACAAACTATCGGATTTGAAATCTCACGTCATGGAAGACCACACGGAACCGTACAAATGTCCGCATTGCACAGAAATGTTTCCAAAAATAAACGATTTCGCTATTCACATAAAGAAAACTCATCCTGATGTCGGTGACCAATCAGTATTGGACGTTCTCGAGGCGTTTTCGAAGCTCGTTAAAGCGTGGAAGTGTGAAAATTGTGGGAAGCAGTTCCACAAAGCGGATAAACTGGCTTTACACCAAGTAGAAGAGCATACGCCAGATATGAAGAACGAGCAACATTTCCAGTGCAGAGACTGTCAAAGAGTCTTCATCAGCAAATGCGGGTTAAACTCGCATATGAGGATGCACCACAGAACAGAAAGTACGGAAGAACCGGAGCCAGAGGAAGTAGGCGTCTTATGCTTGGAGTGTCGAAAAGTATGCCCCGATATGAATGCTCTAACATCCCACATGCGTCTACACTCAATGGACAGGAAATATCCCTGCAAATACTGCGATTTCCGCTTCGCCACGCCGCAGAAGCGCAAAAAGCACGCGGAAGTACACACGGGCGATATGAAATACGTCTGCTTCATATGCGAATACACGTGCAGCTCAGAGAACCGGCTCAAACAGCACAAAATGTCCATCAAACATGCTAACATGAAAGAGTATTTACTGACCGGAAAACCATTAATAGAAGAGGAACAATCGACGTCCAAAACGGAAAAGATAAAAGATATGTTGAGGAAAAAGGAGTGGGgggttaaaaagaaaaagaaagagaaGAGAGACAAAGAGGGCGATATCGCGTGCGATATTTGCGGGGAAAAGTTCGCCGGTGAAACAGAAATGTTAGAACATAAGCAAACGCACCCTTTCATAGAGTTCCCCAATGATGATAAACCTAgtagaatatttttcaaatga
- Protein Sequence
- MDANISLQDTTEDILIKEEFNPHIEENIDVKTETEYIENPDKPDSFDVDITENNYTNVELQIKNELSINIQPEDSQSSAEANNFKNEVETETILPSSPNYNEIKFEMPVEDTNEVTYDYPNYDDSMDSSEAAALSQVEVCLSDGVSIKSENAYEDTSKDFPRIIKNESELTVTETHLISNKFINTTSTITSTHGGIIGSQTTKTLIMEIHPMNLENQNLKMGNPEEILPTSNETYETDEPFQLNSITGNILSLEQEAYGLLKKKKTTPIMEIACPKCPKVFYQKFTLTRHLKVHTSIENRANGVLKGLKTRLEKKKVKEEEVVKMELPVKKEEKGGYHCTCGKSFQRRSRMETCLRSHTDYADSSSYDCATCDKKFKSKELLIYHRQRQHRKKFPCKFCPTDYHTQKALFKHLRIHQKVQLTEYKIIAEGNQDLQCLLCEKTYNKLSDLKSHVMEDHTEPYKCPHCTEMFPKINDFAIHIKKTHPDVGDQSVLDVLEAFSKLVKAWKCENCGKQFHKADKLALHQVEEHTPDMKNEQHFQCRDCQRVFISKCGLNSHMRMHHRTESTEEPEPEEVGVLCLECRKVCPDMNALTSHMRLHSMDRKYPCKYCDFRFATPQKRKKHAEVHTGDMKYVCFICEYTCSSENRLKQHKMSIKHANMKEYLLTGKPLIEEEQSTSKTEKIKDMLRKKEWGVKKKKKEKRDKEGDIACDICGEKFAGETEMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826102;
- 90% Identity
- iTF_00826102;
- 80% Identity
- -