Hato033844.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023306.1:5139666-5144371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5e-06 0.00022 22.6 0.6 3 23 274 294 272 294 0.97 2 12 5.8 5.3e+02 2.6 0.4 5 14 339 348 337 352 0.84 3 12 0.00013 0.012 17.2 1.7 1 23 366 389 366 389 0.96 4 12 0.0017 0.15 13.7 2.4 1 23 393 415 393 415 0.98 5 12 0.0016 0.14 13.8 0.3 2 23 434 456 433 456 0.93 6 12 0.00059 0.054 15.2 1.2 1 23 460 483 460 483 0.98 7 12 0.0033 0.3 12.8 0.6 2 23 506 528 505 528 0.90 8 12 1.1e-05 0.00096 20.6 3.8 1 23 538 560 538 561 0.96 9 12 0.0072 0.66 11.7 1.0 3 23 578 598 577 598 0.98 10 12 0.0041 0.37 12.5 1.5 1 23 604 626 604 626 0.96 11 12 0.1 9.4 8.1 2.9 1 22 632 653 632 656 0.90 12 12 0.0018 0.17 13.6 0.0 3 23 709 729 707 729 0.97
Sequence Information
- Coding Sequence
- ATGGACACCAACATATCCCTCCAAGATACTACTGAAGACATACTCGTCAAAGAGGAATTCAATCCCCACATAGAAGAAAACATAGACGTCAAAACTGAAACGGAATACATTGAAAATGCAGATAAACCTGATTCATACGATATTGATATCACAGATAATAACTACACAAATGTCGAATTGCAAATTAAAAATGAGTTGTCTATAAACATACAGCCAGAAGATTCTCAAAGCAGTGCTGAAGTAAACAACATAAAGAATGAAGTTGAAACTGAGACAATTTTGCCGAGTAGTCCTAATTACAATGCGATGAAATTCGAAATGCCAGTAGCAGACACCAGTGAGGCGACGTATGATTATCCACATTATGATGATAGTATGGACAGCAGCGAGGCGACAGCTCTGAGTCAAGTTGAGGTGTGTTTGAGTGATGGTGTTAGTATCAAGTCTGAGAATGCTTATGAGGATACCTCAAAAGACTTCCCAAGAATCATCAAAAATGAATCAGAACTAACAGTTACAGAAACACATCTAATCTCCAATAAATTCATCAATACAACTTCTACCATCACCAGCACTCATGGAGGCATCATTGGCTCTCAAACAACCAAGACCTTGATCATGGAAATACACCCCATGAATCTAGAGAACCAGAATTTGAAGATGGGCAACCCTGAAGAAATCCTTCCTACCAGCAACGAAACCTACGAGACAGACGAACCTTTTCAACTAAACTCCATCACTGGCAACATCCTATCCTTAGAACAGGAAGCTTACGGCTTgctaaagaagaagaagacaacACCCATAATGGAAATGGCCTGTCCCAAGTGCCCTAAAGTTTTCTATCAGAAATTCACTCTCAACAGACATCTAAAAGTTCATACGTCGATTGAAAACAGAGCAAACGGAGTTCTCAAAGGTTTGAAAACGAGGTTAGAGAAAAAGAAGgttaaagaagaagaagttgTAAAGACGGAGCCAGTAAAGAAGGAAGAAAAAGGTGGGTATCATTGTACTTGCGGCAAAAGTTTCCAACGGCGAAGTCGAATGGAGACCTGCCTGAGATCGCACACTGATTATGCCGACTCCAGTTCATACGACTGCGCGACTTGCGataaaaaattcaaatcaaaGGAGCTGTTAATATACCACCGACAACGGCAACACCGTAAAAAGTTTCCGTGCAAATTCTGCCCGACCGACTACCACTCGCAAAAAGCACTCTTCAAACATTTACGAATACATCAGAAAGTCCAACTGACCGAATACAAAATAATGGCAGAAGGAAATCAGGATCTCCAGTGTCTGTTATGCGAAAAAACCTACAACAAGCTATCGGACTTGAAGTCCCACGTCATGGAAGACCACACCGAACCGTACAAATGTCCGCATTGTACAGAAATGTTTCCGAAAATAAACGATTTCGCCATTCACATAAAGAAAACGCACCCTGATGTCGGCGACCAATCAGTTTTGGACGTCCTCGAAGCATTTTCGAAGCTCGTGAAAGCGTGGAAGTGTGAAAATTGTGGCAAGCAGTTCCACAAAGCGGATAAACTGGCTTTACACCAAGTAGAAGAGCATACGCCAGATATGAAAAACGAGCAACATTTTCAGTGCGGAGACTGCCAACGAGTCTTCATCAGCAAATGCGGGTTAAACTCGCACATGAGGATGCACCACAGAACGGAGAGTGCGGAAGAACCGGAGCCAGAAGAAGTAGGCGTCTTATGCTTGGAGTGTCGAAAAGTTTGCCCAGACATGAACGCTCTAACATCGCACATGCGTCTACACTCAATGGACAGGAAGTATCCCTGCAAATACTGCGATTTTCGCTTCGCTACGCCGCAAAAGCGAAAAAAGCACTCGGAAGTACACACGGGCGATATGAAATACGTCTGCTTCATATGCGAATACACGTGCAGCTCAGAGAACCGGCTCAAACAGCACAAAATGTCCATCAAACATGCCAACATGAAAGAGTATTTACTAACAGGAAAACCGTTCATAGAAGAGGAACAATCGACGTCCAAAACGGAAAAGATAAAAGACACGTTGAGGAAAAAAGAGtggggggttaaaaagaaaaagaaagagaagaGAGACAAGGAGGGCGATATTGCCTGCGATATTTGCGGGGAAAAGTTCGCCGATGAAACAGAAATGTTAGAACATAAGCAAACGCACCCTTTTATAGAGTTCCCTAATGATGATAAACCTAGTAGAATATTTTTCAAATGA
- Protein Sequence
- MDTNISLQDTTEDILVKEEFNPHIEENIDVKTETEYIENADKPDSYDIDITDNNYTNVELQIKNELSINIQPEDSQSSAEVNNIKNEVETETILPSSPNYNAMKFEMPVADTSEATYDYPHYDDSMDSSEATALSQVEVCLSDGVSIKSENAYEDTSKDFPRIIKNESELTVTETHLISNKFINTTSTITSTHGGIIGSQTTKTLIMEIHPMNLENQNLKMGNPEEILPTSNETYETDEPFQLNSITGNILSLEQEAYGLLKKKKTTPIMEMACPKCPKVFYQKFTLNRHLKVHTSIENRANGVLKGLKTRLEKKKVKEEEVVKTEPVKKEEKGGYHCTCGKSFQRRSRMETCLRSHTDYADSSSYDCATCDKKFKSKELLIYHRQRQHRKKFPCKFCPTDYHSQKALFKHLRIHQKVQLTEYKIMAEGNQDLQCLLCEKTYNKLSDLKSHVMEDHTEPYKCPHCTEMFPKINDFAIHIKKTHPDVGDQSVLDVLEAFSKLVKAWKCENCGKQFHKADKLALHQVEEHTPDMKNEQHFQCGDCQRVFISKCGLNSHMRMHHRTESAEEPEPEEVGVLCLECRKVCPDMNALTSHMRLHSMDRKYPCKYCDFRFATPQKRKKHSEVHTGDMKYVCFICEYTCSSENRLKQHKMSIKHANMKEYLLTGKPFIEEEQSTSKTEKIKDTLRKKEWGVKKKKKEKRDKEGDIACDICGEKFADETEMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827288; iTF_00207234; iTF_00666758; iTF_00143282;
- 90% Identity
- iTF_00827288;
- 80% Identity
- -