Basic Information

Insect: Hypomecis punctinalis
Gene Symbol: -
Assembly: GCA_949316475.1
Location: OX438822.1:9475649-9477547[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1 1.1e+02 4.9 0.1 2 12 42 52 41 56 0.87

2 15 2.4 2.6e+02 3.7 0.5 2 23 85 107 84 107 0.94

3 15 1.1e-06 0.00012 23.7 2.1 1 23 112 135 112 135 0.97

4 15 4.8e-05 0.0052 18.5 0.6 1 23 139 162 139 162 0.91

5 15 0.05 5.4 9.0 0.6 2 23 165 187 164 187 0.95

6 15 0.81 88 5.2 0.3 2 19 194 211 194 214 0.92

7 15 0.0014 0.15 13.9 3.0 1 22 324 345 324 347 0.90

8 15 1.7 1.8e+02 4.2 0.1 3 23 378 399 376 399 0.93

9 15 0.00063 0.069 15.0 0.3 1 23 420 443 420 443 0.96

10 15 0.28 31 6.6 0.2 3 21 451 469 450 470 0.93

11 15 1.5e-05 0.0017 20.1 0.7 2 23 479 501 478 501 0.95

12 15 0.0026 0.28 13.1 0.4 1 23 506 529 506 529 0.97

13 15 3.5e-05 0.0038 19.0 1.5 1 23 533 556 533 556 0.98

14 15 2.8e-05 0.003 19.3 1.4 2 23 563 584 563 584 0.96

15 15 1.7e-05 0.0018 20.0 0.6 1 23 590 612 590 612 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1	1.1e+02	4.9	0.1	2	12	42	52	41	56	0.87
2	15	2.4	2.6e+02	3.7	0.5	2	23	85	107	84	107	0.94
3	15	1.1e-06	0.00012	23.7	2.1	1	23	112	135	112	135	0.97
4	15	4.8e-05	0.0052	18.5	0.6	1	23	139	162	139	162	0.91
5	15	0.05	5.4	9.0	0.6	2	23	165	187	164	187	0.95
6	15	0.81	88	5.2	0.3	2	19	194	211	194	214	0.92
7	15	0.0014	0.15	13.9	3.0	1	22	324	345	324	347	0.90
8	15	1.7	1.8e+02	4.2	0.1	3	23	378	399	376	399	0.93
9	15	0.00063	0.069	15.0	0.3	1	23	420	443	420	443	0.96
10	15	0.28	31	6.6	0.2	3	21	451	469	450	470	0.93
11	15	1.5e-05	0.0017	20.1	0.7	2	23	479	501	478	501	0.95
12	15	0.0026	0.28	13.1	0.4	1	23	506	529	506	529	0.97
13	15	3.5e-05	0.0038	19.0	1.5	1	23	533	556	533	556	0.98
14	15	2.8e-05	0.003	19.3	1.4	2	23	563	584	563	584	0.96
15	15	1.7e-05	0.0018	20.0	0.6	1	23	590	612	590	612	0.98

Sequence Information

Coding Sequence: ATGAAAGACAGACAAAATTTGGTAGAGCATAGCTATAGTCACTTGCCCTGTAACACCAAACATAACTCCTTGAAGGCTCTGAATATAGCAGACTTTGACGTCAAAGTGGACGTATCTGATATACAGTGTAAAATTTGCTCCGAAAGGTTCAATAACGTTCACAGTATAGGGTTCCATTTAACGCATAAACACAAATTATCGTATGACCTGAACATAGTCGCTGGTATCACGGGTTACAGGCTGGTTGACTTGAAATGTCTCATATGTTTTGAGCAGATGAAGTCGTTAAGAGGTCTTATTCAACACACGAATAAGGAGCATCCAGTCAATCTCTACCAATGTAATGAATGCGGGAAAAAGTTTCGAAGGAAACATGACTTGGCTGGGCATATAAATCAGACGCACAGAGAGGAGTTTAAATGCCCCAAATGTCCGGAGACTTTCAAATCGAAAGCGGAATATGTGAAGCACAAGGATGAAGGCCACATATCGCAATGTAACTTGTGCTACCAAACGTTTGCGTCGTATACGTTGCGTCTGCAGCATATGAAGGGTGCGCATGATATAACTATGGGAGGAACTTGTGGATTttgctataaaatatttaactcacgATTCGCGTTTTTGGACCACGCAGGCAAATGTTCAGTTGGCGGACCTGTAAACATTGAAGTGTCCTTAACTCCAGTGAAAATGGACTCGGACGCTGATCCCTATTCTTTCAACACAAGTCGTTCTAATACAGACCCTTATTCTTTCAATATGACACGTCCTGAGTTCTTCGATATGGCAAACGCCAAAGCTTTGAGCACGCCGATCAAAGTAGATAAAGACATGAAGACTCCGATTGCACCGGAGACGGTCACAGCTATGGTTGCTATGCGCGAGGCAAAGAGAATTGCGAGGAATAGCATCGCTTATGTCTTCAATAACACCACTGTAATTCCGTTCAAACGGTACCACAATAGGTTCAGATGCTTCTACTGTCCTAAAGAGTTCAACAGTTGCAACGATCTTCGGACTCATACTGTTGAAGAGCATCCGGTTTGCGACGTGAAACTGAAAAGTATGAAATTGAGTGGCTTGGGCTATCAGTACATGGGTATTAAAGTCGATTCTTCTTTACTGGCGTGCAAGTTATGTTACGACCAGTATGAAGACTTGAAAAGCTTGCTGGCTCATCTAGAAACTGAACACGGAGCAAAGCTTGGCAACTGCGCCGATAAATTGATGCCTTTTAAACTGATGGACGATCAGTACCCCTGTCCGCAATGTGGAGAAGAATTCTCGAGTTTCAGCAATACGTTGATCCATTTCAATAAGGAACATAATACGGAGAACAGAGTCTTGTGCGTGACTTGCGGCGAATCTTTTCACGGTGTTACCTCGCTGCAGATTCACAGGAACCGCTGTAACGTCCCTCCCGAGCGCGTCAAATGCACTAGATGTGACCAGGGTTTCTACAACAGGAGCCAACTGACACGACACATGGGAATGGTGCATAAAAAGAAAGTCTTTAAATGTCCTAATTGCACAGAGGCGTTCGTGTCTGAACATGCCAAAACGGTGCATATTATCAAAGTCCATAAGGGTGGCTATCAGTGCCCACAATGCGATGCTTCTTTCATATTCCGCTCCCGTTTGATTCATCACATCAAACGATTACACCTTTTGGAGAAGAACGAGAAGTGTCCGTATTGCGATAAGACGTTCTTCGACCAGCGTAGGTTGAGGACACACATGGTCTTGCACACGGGGGAAAAAGCGTTCAGCTGTGCGTATTGCGACAAGACGTTTTCGTGGAAAAAGAATCTGATAAGCCACATTAATGTGCATTTAAAGAATGCGGGCCAGGAAAAGAAGAGGAGGGAGAGGAATAGTAAAAGCTTAACGATATAA
Protein Sequence: MKDRQNLVEHSYSHLPCNTKHNSLKALNIADFDVKVDVSDIQCKICSERFNNVHSIGFHLTHKHKLSYDLNIVAGITGYRLVDLKCLICFEQMKSLRGLIQHTNKEHPVNLYQCNECGKKFRRKHDLAGHINQTHREEFKCPKCPETFKSKAEYVKHKDEGHISQCNLCYQTFASYTLRLQHMKGAHDITMGGTCGFCYKIFNSRFAFLDHAGKCSVGGPVNIEVSLTPVKMDSDADPYSFNTSRSNTDPYSFNMTRPEFFDMANAKALSTPIKVDKDMKTPIAPETVTAMVAMREAKRIARNSIAYVFNNTTVIPFKRYHNRFRCFYCPKEFNSCNDLRTHTVEEHPVCDVKLKSMKLSGLGYQYMGIKVDSSLLACKLCYDQYEDLKSLLAHLETEHGAKLGNCADKLMPFKLMDDQYPCPQCGEEFSSFSNTLIHFNKEHNTENRVLCVTCGESFHGVTSLQIHRNRCNVPPERVKCTRCDQGFYNRSQLTRHMGMVHKKKVFKCPNCTEAFVSEHAKTVHIIKVHKGGYQCPQCDASFIFRSRLIHHIKRLHLLEKNEKCPYCDKTFFDQRRLRTHMVLHTGEKAFSCAYCDKTFSWKKNLISHINVHLKNAGQEKKRRERNSKSLTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00826072;
90% Identity: iTF_00826072;
80% Identity: -