Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023310.1:5905951-5907960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1 1e+02 4.8 0.8 3 23 31 51 30 51 0.96

2 15 1.4 1.3e+02 4.5 0.2 2 12 79 89 78 92 0.88

3 15 1.2e-06 0.00011 23.6 2.1 1 23 149 172 149 172 0.97

4 15 5.4e-05 0.0049 18.4 0.6 1 23 176 199 176 199 0.91

5 15 0.056 5.1 8.9 0.6 2 23 202 224 201 224 0.95

6 15 0.91 83 5.1 0.3 2 19 231 248 231 251 0.92

7 15 0.0016 0.14 13.8 3.0 1 22 361 382 361 384 0.90

8 15 1.9 1.7e+02 4.1 0.1 3 23 415 436 413 436 0.93

9 15 0.00071 0.064 14.9 0.3 1 23 457 480 457 480 0.96

10 15 0.32 29 6.6 0.2 3 21 488 506 487 507 0.93

11 15 1.7e-05 0.0016 20.0 0.7 2 23 516 538 515 538 0.95

12 15 0.0029 0.27 13.0 0.4 1 23 543 566 543 566 0.97

13 15 3.9e-05 0.0036 18.9 1.5 1 23 570 593 570 593 0.98

14 15 3.1e-05 0.0029 19.2 1.4 2 23 600 621 600 621 0.96

15 15 1.9e-05 0.0017 19.9 0.6 1 23 627 649 627 649 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1	1e+02	4.8	0.8	3	23	31	51	30	51	0.96
2	15	1.4	1.3e+02	4.5	0.2	2	12	79	89	78	92	0.88
3	15	1.2e-06	0.00011	23.6	2.1	1	23	149	172	149	172	0.97
4	15	5.4e-05	0.0049	18.4	0.6	1	23	176	199	176	199	0.91
5	15	0.056	5.1	8.9	0.6	2	23	202	224	201	224	0.95
6	15	0.91	83	5.1	0.3	2	19	231	248	231	251	0.92
7	15	0.0016	0.14	13.8	3.0	1	22	361	382	361	384	0.90
8	15	1.9	1.7e+02	4.1	0.1	3	23	415	436	413	436	0.93
9	15	0.00071	0.064	14.9	0.3	1	23	457	480	457	480	0.96
10	15	0.32	29	6.6	0.2	3	21	488	506	487	507	0.93
11	15	1.7e-05	0.0016	20.0	0.7	2	23	516	538	515	538	0.95
12	15	0.0029	0.27	13.0	0.4	1	23	543	566	543	566	0.97
13	15	3.9e-05	0.0036	18.9	1.5	1	23	570	593	570	593	0.98
14	15	3.1e-05	0.0029	19.2	1.4	2	23	600	621	600	621	0.96
15	15	1.9e-05	0.0017	19.9	0.6	1	23	627	649	627	649	0.98

Sequence Information

Coding Sequence: ATGTTACCCATAGAAAAAAGACGGCGGAACCTCGAGATTCTATTCAACAATACCACGCTCGTTCCCTTTAAACACCGCGGACAGAGCTTGTGCTTTTTCTGCGGCTTAAAAATGAAAGACAGACAAAACTTGATAGAGCATAGCTATACTCACTTGCCCTGTAACACCAAACATAACTCCTTGAAGGCTCTGAATATAGCAGACTTTGACGTCAAAGTGGACGTCTCTGATATACAGTGTAAAATTTGCTCCGAAAGGTTCAATAACGTTCACGGTATAGGGTTCCATTTAACGCATAAACATAAATTATCGTATGACCTGAACATTGTGGCTGGTATCACGGGTTACAGGCTGGTTGACCTGAAATGTCTAATATGTTTTGAACAGAAGAATTCGTTGAGAGGTCTCATTCAACACACGAATAAGGAGCATCCAGTTAATCTCTACCAATGTAATGAATGTGGGAAAAAGTTCCGAAGGAAACATGACTTGGCCGGGCACATAAATCAGACGCACAGAGAGGAGTTTAAATGCCCCAAATGTCCGGAGACTTTTAAATCGAAAGCGGAATATGTGAAGCACAAGGATGAAGGCCACATATCGCAATGTAACTTGTGCTATCAAACGTTTGCATCTTACACGTTGCGTCTGCAGCATATGAAGGGTGCGCATGATATAACTATGGGAGGAACTTGTGGATTCTGCTATAAGATATTTAACTCTCGATTCGCGTTCTTGGACCACGCAGGCAAATGCTCAGTTGGCGGACCTGTAAACATTGAAGTGTCCTTAACTCCAGTGAAAATGGACTCGGACGCTGATCCCTATTCTTTCAACACAAGTCGTTCCAATGCTGACCCCTATTCTTTCAATGTGACACGTCCTGAGTTCTTCGATATGGCAGACGCCAAAGCTTTGAGCACTCCGATTAAAGTAGATAAAGACTTGAAAACTCCGATGGCACCGGAGACGGTCACAGCTATGGTTGCTATGCGTGAAGCAAAGAGAATTGCGAGGAATAGCATCGCTTATGTCTTCAACAACACCACTGTCATTCCGTTCAAACGGTACCACAATAGGTTCAGATGCTTCTACTGCCCAAAAGAGTTCAACAGTTGCAATGATCTTCGGACTCATACTGTTGAAGAGCACCCGGTTTGCGACGTGAAAGTGAAAAGCATGAAATTGAGTGGCTTGGGATATCAGTACATGGGTATTAAGGTTGATTCTTCTTTGCTGGCGTGTAAGTTATGTTACGACCAGTATGAAGACTTGAAAAGCTTGCTGGCTCATCTGGAAACTGAACACGGAGCAAAGCTTGGCAACTGCGCTGATAAATTGATGCCTTTTAAGCTGATGGACGATCAGTACCCATGCCCACAATGTGGGGAAGAATTCTCTAGTTTCAGCAATACCTTGATCCATTTCAATAAAGAACATAATACGGAGAATAGAGTCTTATGCGTGACTTGCGGCGAATCTTTTCATGGTGTTACCTCTCTGCAGATACATAGAAACCGCTGTAACGTCCCTCCCGAGCGCGTCAAATGCACCAGATGTGACCAAGGTTTCTACAACAGGAGCCAACTGACGCGGCACATGGGCATGGTGCATAAAAAGAAAGTCTTCAAGTGTCCCAATTGCACAGAGGCGTTTGTATCTGAACACGCCAAAACGGTGCATATTATCAAAGTACATAAGGGTGGTTATCAATGCCCCCAATGCGATGCTTCTTTCATATTCCGCTCACGTTTGATTCATCACATCAAACGATTGCACCTTCTGGAGAAGAACGAGAAGTGTCCGTATTGTGATAAGACGTTCTTCGACCAGCGTAGGTTGAGGACCCACATGGTCTTGCACACGGGGGAAAAAGCGTTCAGCTGTGCGTATTGCGACAAGACGTTTTCGTGGAAAAAGAATCTTATTAGCCACATTAATGTGCATTTGAAGAATTCGGGACAGGAAAAGAAGAGGAGGGAGAGGAATAGTAAAAACTTAACGATATAA
Protein Sequence: MLPIEKRRRNLEILFNNTTLVPFKHRGQSLCFFCGLKMKDRQNLIEHSYTHLPCNTKHNSLKALNIADFDVKVDVSDIQCKICSERFNNVHGIGFHLTHKHKLSYDLNIVAGITGYRLVDLKCLICFEQKNSLRGLIQHTNKEHPVNLYQCNECGKKFRRKHDLAGHINQTHREEFKCPKCPETFKSKAEYVKHKDEGHISQCNLCYQTFASYTLRLQHMKGAHDITMGGTCGFCYKIFNSRFAFLDHAGKCSVGGPVNIEVSLTPVKMDSDADPYSFNTSRSNADPYSFNVTRPEFFDMADAKALSTPIKVDKDLKTPMAPETVTAMVAMREAKRIARNSIAYVFNNTTVIPFKRYHNRFRCFYCPKEFNSCNDLRTHTVEEHPVCDVKVKSMKLSGLGYQYMGIKVDSSLLACKLCYDQYEDLKSLLAHLETEHGAKLGNCADKLMPFKLMDDQYPCPQCGEEFSSFSNTLIHFNKEHNTENRVLCVTCGESFHGVTSLQIHRNRCNVPPERVKCTRCDQGFYNRSQLTRHMGMVHKKKVFKCPNCTEAFVSEHAKTVHIIKVHKGGYQCPQCDASFIFRSRLIHHIKRLHLLEKNEKCPYCDKTFFDQRRLRTHMVLHTGEKAFSCAYCDKTFSWKKNLISHINVHLKNSGQEKKRRERNSKNLTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00827252;
90% Identity: iTF_00827252;
80% Identity: -