Hpun043370.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438823.1:13153149-13159731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.2 21 7.1 0.2 5 21 192 208 189 209 0.92 2 12 0.00053 0.058 15.2 0.3 2 23 233 254 232 254 0.97 3 12 0.00034 0.037 15.8 4.1 2 23 268 289 268 289 0.98 4 12 6.8e-05 0.0074 18.0 1.3 1 23 297 320 297 320 0.97 5 12 1.7e-06 0.00018 23.1 0.3 1 23 327 349 327 349 0.98 6 12 0.074 8 8.5 2.3 2 23 355 376 355 376 0.96 7 12 4.6e-07 5.1e-05 24.9 0.6 1 23 382 404 382 404 0.96 8 12 0.0017 0.19 13.6 0.4 1 23 410 432 410 432 0.99 9 12 1.9e-06 0.00021 22.9 0.3 1 23 438 460 438 460 0.98 10 12 0.0003 0.033 16.0 0.2 1 23 466 488 466 488 0.98 11 12 1.5e-05 0.0017 20.1 4.3 1 21 494 514 494 516 0.96 12 12 2.1e-05 0.0023 19.6 0.1 1 23 522 544 522 544 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCAGATCAGAATTTCCACAAAATATGCCGCGCTTGCCTCTCAGAATCTAGCAACATGAAGTCACTATTCGCTAAAGATGAGAGAGGTCATCAACTATCGGATTTGCTCGTAACTGCTGCAAATATAGAAGTTAGCTGCTCTGATGCTCTTCCTAAACAAATTTGTGCTGATTGTGCGGGGTTTCTTTACCAGGCTGATGATTTTAAACGTCGGTGCAGAGAATCCGACATGATTCTAAAAAACGTCTGTTCTAGCGGTTTTGATCCTTATTTCGTGAAAACTGACACCGAAGCTAATAAAAGCGAAGCTAAATTACCAGATTCAAATCTCGAAAACCACAGCAACTATGAACTGGAGGTAGAAAAACCGGATATACTAAGTTTGTTTGCCAATTCTGATATTAGTTTTAAAAAGTTGAACGCCTCCAAACTTGAAAATAATCATATTGTGAAGACAGAAGTAAGTGCAGAATATGAGAATCTCGATTATGGTGATAGTTTTGATGATAGAGAAGAGTTTAGTGTTCCGGTAGAAATTGATATGAAAGAAGTTACAACATACAAATGTGTGTGCGGAGAAGAGTACAAAAATAAAGACAAGTTTAAAGAGCATGTGAAATTAAAGAGCTGTGTTAAGAAGAGACGAAAAAAGGACTCAAATAAAACCTGTATcccaataaaaaacaaaatacaatgtcCGAAATGTAATCTAACTTttgaaactataaataaatggaCGGCACATCAATTAACGCATTCAAAGGAAGTAAAAGATGAAGAAGAATTACCTAAACCACAATGTTCTCTGTGTCTGCGGcagtttaaaaataagaaaactttaACAAAGCATATTAAGAGGCATGAAACAAAAGACAATGTTAAGTACATTTGCACGAAATGTAAAAGGGAGTTTAAGTATAAAGCATTTTTGGAGAGTCATATGCTGTCTGTGCATGCAAAcgGTGTGGACGGGTTCACATGTGAAGACTGCCCGGAGAAGTTTTCATCTCGGAAGAGTCTGGAAGTGCATATGGACATGCACAGAAAGAAGAAAAATTCCTGTCCCTTTTGTAACAAGTCTTTCCTTATGGTTTGCACGCTGAAGGACCATTTAAGAATCCATACagGTGAAAAGCCGTTTTTATGTTCCATCTGCGGCAAGGGTTTTAGTCAAAAGAATAATTTGGCGCAGCATGTGAGGCGTCACATGGGCGTCAAGCCTTACAAATGCGACTCCTGCGCTATGGAgTTCGTATCAAAAGGAGAGTTAGACTCGCACACCCGCAAACACACGGGCGCGCACCCCTTCATATGTGACGAGTGTGGTAGTGGCTTCACTACCTCGTCGGCTCTGGTCAAACACCGACGCACGCACACAGGCGAGAGGCCTTACGCCTGCGACTTGTGCCCTTTGAGCTTCGCTGCCACTGGAACCTTGAAGAACCATAGGAGAACCCATAcaggtgAACGACCTTTCCAATGCAGTCACTGCGAGAAATCCTTCGTCCAAAGATCGGATTTGATATCCCACATAAGGTGCCACACGGGCGAGCGGCCGTTTGTCTGCCCCCAGTGTGGGCAGGCCTTTAGGAAGGCTGCGGCGATGAAAACTCACGTCAAGATGCATTCTAGGGAGAATTTGCAGGTTTTGAATATGCCTTGCTAG
- Protein Sequence
- MEADQNFHKICRACLSESSNMKSLFAKDERGHQLSDLLVTAANIEVSCSDALPKQICADCAGFLYQADDFKRRCRESDMILKNVCSSGFDPYFVKTDTEANKSEAKLPDSNLENHSNYELEVEKPDILSLFANSDISFKKLNASKLENNHIVKTEVSAEYENLDYGDSFDDREEFSVPVEIDMKEVTTYKCVCGEEYKNKDKFKEHVKLKSCVKKRRKKDSNKTCIPIKNKIQCPKCNLTFETINKWTAHQLTHSKEVKDEEELPKPQCSLCLRQFKNKKTLTKHIKRHETKDNVKYICTKCKREFKYKAFLESHMLSVHANGVDGFTCEDCPEKFSSRKSLEVHMDMHRKKKNSCPFCNKSFLMVCTLKDHLRIHTGEKPFLCSICGKGFSQKNNLAQHVRRHMGVKPYKCDSCAMEFVSKGELDSHTRKHTGAHPFICDECGSGFTTSSALVKHRRTHTGERPYACDLCPLSFAATGTLKNHRRTHTGERPFQCSHCEKSFVQRSDLISHIRCHTGERPFVCPQCGQAFRKAAAMKTHVKMHSRENLQVLNMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826049;
- 90% Identity
- iTF_00826049;
- 80% Identity
- -