Hato035563.2
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023308.1:3086688-3096142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 20 7.1 0.2 5 21 193 209 190 210 0.92 2 13 0.00059 0.054 15.2 0.3 2 23 234 255 233 255 0.97 3 13 0.00038 0.034 15.8 4.1 2 23 269 290 269 290 0.98 4 13 7.5e-05 0.0069 18.0 1.3 1 23 298 321 298 321 0.97 5 13 1.8e-06 0.00017 23.0 0.3 1 23 328 350 328 350 0.98 6 13 0.082 7.5 8.4 2.3 2 23 356 377 356 377 0.96 7 13 5.2e-07 4.7e-05 24.8 0.6 1 23 383 405 383 405 0.96 8 13 0.0019 0.17 13.5 0.4 1 23 411 433 411 433 0.99 9 13 2.1e-06 0.00019 22.8 0.3 1 23 439 461 439 461 0.98 10 13 0.00033 0.03 15.9 0.2 1 23 467 489 467 489 0.98 11 13 0.00033 0.03 15.9 0.2 1 23 495 517 495 517 0.98 12 13 1.7e-05 0.0016 20.0 4.3 1 21 523 543 523 545 0.96 13 13 2.4e-05 0.0022 19.5 0.1 1 23 551 573 551 573 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCAGATCAGAATTTCCACAAAATATGCCGCGCTTGCCTCTCAGAATCTAGCAACATGAAGTCACTATTCGATAAAGATGAGAGAGGTCAACTATCGGATTTGCTCGTAACTGCAGCAAATATAGAAGTTAGCTGCTCTGATGCTCTTCCTAAACAGATTTGTGCTGACTGTGCGGGGTTTCTTTACCAGGCTGATGATTTTAAACGTCGCTGCAGAGAATCTGACATGATCCTAAAAAACTTATGTTCTAGCGGTTTTGATCCTTATTTCGTAAAAACTGATATCGATGCTAGTAAAAGCGAGGCTAAATTACCAGATTCAAGTCTCGATAACCCTAGCAATTGTGAACTAGAGGTAGAAAAATCGGATTTACTAAGTTTGTTTGCCAACACTGAtattagttttaaaaagttgAATGCTTCCAAACTTGAGGAAAATCATGTCGTGAAGACGGAAGTAAGTGCAGAATATGAGAACCTCGATTACGGTGACAGTTTTGATgacagagaagagtttactgtTCCGGTAGAAATTGATAAAGAATTAAAAGAAGTTACAACGTACAAATGTGTTTGCGGAGAAGAGTACAAAAATAAAGACAAGTTCAAAGAGCATGTGAAATTAAAGAGCTGTGTTAAAAAGAGACGAAAAAAGGACTCAAATAAGACCTGTATCccgataaaaaacaaaatacaatgtcCAAAATGTAATCTAACTTTTGAAACTATAAATAAATGGACAGCACATCAATTAACGCATTCAAAAGAAGTAAAAGAGGAAGAAGAATTACCAAAACCACAATGTTCTCTGTGTCTGCGgcagtttaaaaataagaaaactttAACAAAGCATATTAAAAGACATGAAACAAAAGACAATGTTAAGTACATATGTACGAAATGTAAACGGGAGTTTAAGTATAAAGCATTTTTGGAGAGTCATATGCTGTCTGTGCATGCAAATGGTGTGGACGGTTTTACATGTGAAGACTGTCCCGAGAAGTTTTCTTCTCGAAAAAGTCTAGAAGTGCACATGGACATGCACAGAAAGAAGAAAAACTCCTGTCCGTTTTGTAACAAGTCTTTCCTGATGGTTTGCACGCTGAAGGACCATTTACGAATACATACAGGTGAAAAGCCGTTTTTATGTTCGATCTGCGGCAAAGGTTTTAGTCAAAAGAATAACCTGGCGCAGCATGTTAGGCGTCACATGGGGGTCAAGCCTTACAAGTGCGACTCCTGCGCTATGGAGTTCGTATCAAAAGGAGAGCTAGACTCGCATACCCGCAAGCACACGGGCGCGCACCCGTTCATATGCGACGAGTGTGGCAGCGGGTTCACTACCTCCTCAGCTTTAGTCAAACACCGACGTACGCACACAGGCGAGAGGCCTTACGCCTGTGACTTGTGCCCTTTGAGCTTCGCTGCCACTGGAACCTTGAAGAACCATAGAAGAACCCATACAGGCGAGAGGCCTTACGCATGCGACTTGTGCCCTTTGAGCTTCGCTGCCACTGGAACTTTGAAAAATCATCGGAGAACCCACACAGgTGAACGACCTTTCCAATGCAGTCACTGCGAAAAATCCTTCGTCCAAAGATCGGATTTAATATCCCACATAAGGTGCCACACGGGGGAGCGGCCGTTCGTCTGTCCCCAGTGTGGGCAGGCCTTTAGGAAGGCTGCGGCGATGAAAACTCACGTCAAAATGCATTCTAGGGAGAATTTGCAGGTTTTGAATATGCCTTGCTAG
- Protein Sequence
- MEADQNFHKICRACLSESSNMKSLFDKDERGQLSDLLVTAANIEVSCSDALPKQICADCAGFLYQADDFKRRCRESDMILKNLCSSGFDPYFVKTDIDASKSEAKLPDSSLDNPSNCELEVEKSDLLSLFANTDISFKKLNASKLEENHVVKTEVSAEYENLDYGDSFDDREEFTVPVEIDKELKEVTTYKCVCGEEYKNKDKFKEHVKLKSCVKKRRKKDSNKTCIPIKNKIQCPKCNLTFETINKWTAHQLTHSKEVKEEEELPKPQCSLCLRQFKNKKTLTKHIKRHETKDNVKYICTKCKREFKYKAFLESHMLSVHANGVDGFTCEDCPEKFSSRKSLEVHMDMHRKKKNSCPFCNKSFLMVCTLKDHLRIHTGEKPFLCSICGKGFSQKNNLAQHVRRHMGVKPYKCDSCAMEFVSKGELDSHTRKHTGAHPFICDECGSGFTTSSALVKHRRTHTGERPYACDLCPLSFAATGTLKNHRRTHTGERPYACDLCPLSFAATGTLKNHRRTHTGERPFQCSHCEKSFVQRSDLISHIRCHTGERPFVCPQCGQAFRKAAAMKTHVKMHSRENLQVLNMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827238;
- 90% Identity
- iTF_00827238;
- 80% Identity
- -