Hpun019168.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis punctinalis
Gene Symbol
Dis3
Assembly
GCA_949316475.1
Location
OX438805.1:6654959-6670330[+]

Transcription Factor Domain

TF Family
CSD
Domain
CSD domain
PFAM
PF00313
TF Group
Beta-Scaffold Factors
Description
In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.043 1e+03 1.2 0.0 17 45 178 207 165 211 0.74
2 5 0.011 2.6e+02 3.1 0.0 19 41 277 299 265 307 0.79
3 5 0.62 1.5e+04 -2.5 0.0 27 50 389 417 367 420 0.64
4 5 0.00037 9 7.8 0.0 4 53 443 491 441 495 0.76
5 5 0.00056 14 7.2 0.0 17 50 511 545 498 548 0.78

Sequence Information

Coding Sequence
ATGTGGACTAcaaaaacatttctcactaaaacTAAACGCGGCAACATATTGAAAATTGTGAGAGAACATTACTTACGTGATGACTTATTATGTGGATCTGCCGCGTGTAACGTGTGTCCGCACAAAAATGACGAGTTGGTCTTAGAGGCAAATCCTGAATCTATTTGCGCTCTTTTTGACTATCCTCATTACGTAGTTTTGGACACGAATGTTGTCCTGCATCAGATAGACGTTTTGGAAGAAGACGCTTTGAAGAATGTGATAATTCTGCAGACGGTTTTGGAGGAAGTAAAGCATCAGAATACTGCTATATTCCAACGACTCTTGGAAATTGTTGGTAATAACAAAAGAAGGTTCTATTCTTTTGTCAATGAGCATCATAAAGACACATACATAGAACGTCAAGCTGGTGAGAAGCAAAATGACCGAAATGACCGTGCTATTCGCAAAGCAGCTGCCTGGTTCGAGTCTCACTTGAGTATCAATGGGGTGGGCAAGCAGATACCCCGCATAGTGCTGCTTActgatgatgaaaaaaatagGAAGCTGGCTCAAGAAGAAAATATTGTCTGCTGCACTGtcaAGGACTATGTCGAGAATGTCACCAACTGCATTGGCCTGGTAGACAAGTTGTCAAAGAATGTGATGCCGGAGAGCTGTTCCAAGGATGCCCTGTATCCAGCCCATTTGACTCCTGTACAAATCCACGAAGGTATCCGAGGTGGCAAACTGCACCAAGGAACCTTTCATGCTTCCAGGGACAACTTTCTCGAAGGCAATGCTACTGTTTCTGGATTTGAAAAGCAGATATTGCTGCAAGGTCACATCGGCATCAACCGCGCGGTAGACGGCGATGTGGTGGCCATCGAGATACTGCCCGAAGACGAGTGGCGCAGGCCGAGCGATATCGTACTGGAAGATAAGGCTGAGGACGATCCTGGAGACGTCTTACAGGTACTGCCCGAGGACGAGTGGCGCAGGCCGAGCGATATCGTTTTAGAAGATAAGGCCGAGGACGACCCTGGCGACGTCTTACAGGTTACAACGGCGGGTGGACGGCGATGTGGTGGCCAAGAGGTACTGCCCGAGGACGAGTGGCGCAGGCCGAGCGATATCGTTTTAGAAGATAAAGCCGAGGACGACCCTGGAGACGTCTTACAGGAAGAAGCGGTGCTACTGAGTGCAGTGAAGAAGCCCGTGGACCTGAGCGCAGACGAAGTGACGCCCACGGGCCGGGTTGTTGGCATCATACGTAGAAAATGGCGCCAGTACTGCGGGATACTCATGCCGAGCAAGTTCCCTGGCGCGACTCGGCACCTGTTCACGCCGGCAGAAAAACGAATCCCGCGCGTGCGCATCGAAACGCGTCAGAGTGATGTGCTCGCCGCTCAAAGGATTGTCGTCGCTTTGGACTCTTGGCCCCGAAACAGCCGCTACCCACTGGGACATTTCGTCAGAGCCTTGGGACCTATTGATGTGACACGTTATCTGTTCAAGCCAACAGAAAAACGTGTCCCGCGCGTGTGCAACGAAACGCGTCAGAGTGGCGTGCGCGCTGCTCAAATAATCGTCGTGGCCTTGGTCTCTTGGCCCAGAATCAGGCGGTATCCGTTAGGACACTTCGTCAGGGCCCTGATGAAGTGTCTTGAGACTTGGCTGTTACCTCACGACATACCGTTTGTGAGTACGGTGGACAGTAACTTTGGGTACACCGCGACATCGGCCGTCCAGCCGGATGTGCTGTTGCGCGGTCGGGCCTACGGAGGTGTCGCTCTGTTATGGAGGCGTGTTCTTGAGAAGCTTTACTCTGACATTGTTGGTGCCCTTCGAGAGGCGGCGGTGACGAGTCGAGGGAGCAGCAGAAAGAATGGGGGTGGCCCGCGCTTGGTGGGGTAG
Protein Sequence
MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNVCPHKNDELVLEANPESICALFDYPHYVVLDTNVVLHQIDVLEEDALKNVIILQTVLEEVKHQNTAIFQRLLEIVGNNKRRFYSFVNEHHKDTYIERQAGEKQNDRNDRAIRKAAAWFESHLSINGVGKQIPRIVLLTDDEKNRKLAQEENIVCCTVKDYVENVTNCIGLVDKLSKNVMPESCSKDALYPAHLTPVQIHEGIRGGKLHQGTFHASRDNFLEGNATVSGFEKQILLQGHIGINRAVDGDVVAIEILPEDEWRRPSDIVLEDKAEDDPGDVLQVLPEDEWRRPSDIVLEDKAEDDPGDVLQVTTAGGRRCGGQEVLPEDEWRRPSDIVLEDKAEDDPGDVLQEEAVLLSAVKKPVDLSADEVTPTGRVVGIIRRKWRQYCGILMPSKFPGATRHLFTPAEKRIPRVRIETRQSDVLAAQRIVVALDSWPRNSRYPLGHFVRALGPIDVTRYLFKPTEKRVPRVCNETRQSGVRAAQIIVVALVSWPRIRRYPLGHFVRALMKCLETWLLPHDIPFVSTVDSNFGYTATSAVQPDVLLRGRAYGGVALLWRRVLEKLYSDIVGALREAAVTSRGSSRKNGGGPRLVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-