Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: OZ023292.1:18351631-18365119[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.6 2.4e+02 3.7 0.2 2 23 72 93 71 93 0.95

2 18 0.047 4.3 9.2 0.5 2 22 97 117 96 119 0.88

3 18 0.32 29 6.5 1.9 3 23 342 363 340 363 0.94

4 18 1.4 1.3e+02 4.5 0.0 3 19 373 389 371 391 0.95

5 18 0.041 3.8 9.3 0.4 2 23 402 423 401 423 0.94

6 18 0.11 10 8.0 2.0 1 23 471 494 471 494 0.89

7 18 3.1 2.8e+02 3.4 4.1 1 23 532 557 532 557 0.90

8 18 0.59 54 5.7 0.7 2 23 568 590 567 590 0.88

9 18 0.1 9.4 8.1 1.3 1 23 595 618 595 618 0.96

10 18 0.00044 0.04 15.6 1.5 1 23 624 646 624 646 0.97

11 18 0.00051 0.047 15.3 0.8 1 23 653 675 653 675 0.98

12 18 0.00011 0.01 17.4 2.3 1 23 680 702 680 702 0.96

13 18 1.5e-07 1.3e-05 26.5 1.4 1 23 708 730 708 730 0.98

14 18 2.6e-06 0.00024 22.6 1.2 1 23 736 758 736 758 0.97

15 18 0.00029 0.027 16.1 2.4 2 23 765 786 765 786 0.97

16 18 0.00017 0.015 16.9 0.5 2 23 796 818 795 818 0.97

17 18 1.2e-05 0.0011 20.5 0.3 1 23 823 845 823 845 0.99

18 18 0.016 1.5 10.6 3.0 1 23 851 874 851 874 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.6	2.4e+02	3.7	0.2	2	23	72	93	71	93	0.95
2	18	0.047	4.3	9.2	0.5	2	22	97	117	96	119	0.88
3	18	0.32	29	6.5	1.9	3	23	342	363	340	363	0.94
4	18	1.4	1.3e+02	4.5	0.0	3	19	373	389	371	391	0.95
5	18	0.041	3.8	9.3	0.4	2	23	402	423	401	423	0.94
6	18	0.11	10	8.0	2.0	1	23	471	494	471	494	0.89
7	18	3.1	2.8e+02	3.4	4.1	1	23	532	557	532	557	0.90
8	18	0.59	54	5.7	0.7	2	23	568	590	567	590	0.88
9	18	0.1	9.4	8.1	1.3	1	23	595	618	595	618	0.96
10	18	0.00044	0.04	15.6	1.5	1	23	624	646	624	646	0.97
11	18	0.00051	0.047	15.3	0.8	1	23	653	675	653	675	0.98
12	18	0.00011	0.01	17.4	2.3	1	23	680	702	680	702	0.96
13	18	1.5e-07	1.3e-05	26.5	1.4	1	23	708	730	708	730	0.98
14	18	2.6e-06	0.00024	22.6	1.2	1	23	736	758	736	758	0.97
15	18	0.00029	0.027	16.1	2.4	2	23	765	786	765	786	0.97
16	18	0.00017	0.015	16.9	0.5	2	23	796	818	795	818	0.97
17	18	1.2e-05	0.0011	20.5	0.3	1	23	823	845	823	845	0.99
18	18	0.016	1.5	10.6	3.0	1	23	851	874	851	874	0.97

Sequence Information

Coding Sequence: ATGTCTTCTGAAGATTCTGAAGATGAGCCCTTATCCGTCTTGGCCGCGAAGAAAAGTGACAATTTTGGAGATTCACATTCAGTGTCCAAAATTGGTGGTTCGTTAAAACTGAAAATCAAAAAGGAAAATATATCGACTCCACCTGTAAATCCAGAGTGGTTCATAAACAGGAATAGAATTGTCATTCACTATGTGATTGATCACAAGAAAGATTACTGTGGAATTTGCAGATACTTAGTGCCAAACAGGGAAACATGGCAGGAGCACCAGAAATTCCACACACCTTGGAAATGCTCTCAATGTACACAAAGATTCCCGACTCAGTTAATGCTACGTGAACACTTTAGTGATGCTCACAACCTCGTTCACTGCCGTTTTTGTTACCTGCGTCTGCCTAATGATGATCAGTATTACAGACATTTACTTGAAAAACATTCCGTCACAAATACGTCAAGCATTAATGAAGACTGTTTGTGGGATTTCGAATGTAAAGGTGATCAAAAGTTTATATGCTTACTCTGCTCGAAATCAGTCGATGTGGGTAAACAGTTTGCCGATCACTTCATGTCATTCCATCATTTCACCTTGAAATGCTTCATGTTCTTCATTGCCGGCATCGATCTACCATTCAAAGTCAAAGGAGCAGAACTATCACCGGAATTTGTCGATACACAGCTAAAAGCATACAGCACTTTTGGCTACGTCGATTTTATCAAGAGTCTAAAATTCAAGGAAGAATCTGTAACGGTTACCGAAGAAATACCAATTACTGTTGATTGTCAACCAGAGTTGAAAGAGCTTAGTGAATCTTTTGATGATACTGAAGATTTGAAGCTTTGCGAAGAAATTAGAGGTTACAGAGGTGTCCAAGATTTTGATGTTACACTTGTAGAAGTCATTACAATGCAGAAGTGCTATATAGATTACGTAAATGCGACACTAAATGATATAAATTCTAATGAAATGCCGTTGTCATCAGAAATTATGTATACGACTGGCAATATAGAATCAAAGCCAATCAACTGCTGCCTCTGCATGGAAGTGTTCATGAGAACGACTAATTTTGAGACTCACATGAATAAAGCACATGGTGTGAAATCTGTGCCGGTTTATTGGTGTAGAGTGTGTGCGGCGGTTTTTGACAATTTGTCAGAATTGGAGACTCATTCGACACAAGAGTTGGGGGAGTTTGACAATTTGTGGATCTGTCAGTTTTGTGACAAAGAGTTTGATGGACGAGAAGATACGAGGAGACATTTGACAGAGCACTGGGACGAGATAGCGTATGACAACTGTTTTAGTCCGCATTTAGGGTTCAAGTGCAAATTCTGCTCAACTCTGTTTTGGAATGAGACGGACCGAGAAGCCCACCATGTCAAAGTGCACAGTCAAATGAATAAAAGTGATTTCTATAATTGTACACTTTGTGGCGAAGTTTTTGGAGATAAGTTGTTTTTCATCCACCATTACTTTGAGAAACACGACAGCGACATGTCATACCTACTGAAATGCTGTGTTTGCTCCATCGTGCTGGATAATGTGGAAGACATGAGGAGCCACTTTGAAGAATATCATGCTGATGCTAAAAAGATATTCTGTTGCTTGGACGACTGTAAATACAGGCCATTCAGTCAGAGGAAATCATTCTATATACATTTAAAGACTTTCCACGACCCGTCGTCCCGGCAACAACGACCTGTGACGTGTGAGCTGTGTGGGATGGAATTCGCGAACTCCAAGTCGTGCTCCCTGCACGTGTCGCGGGTGCACGGCCCGGGTCGGTTCAAGTGTACCCTGTGCGATGAGGTGCTGCACACCAATGATGAAagAAAGATCCACTACTTGATCCGGCACCCGGGGCGCGCGCAGTTTCAATGCGGCGTGTGCGACAAGTACTTCCAGTACAAGTCGTCGCTCTACATACATAGGCAGGAACATTCCCCGCACAAGAAGGATTACACTTGCGCCTACTGTGGGAAAAACTTCTTGaaaaaagaTTCTTACCGCGAACACATAATGATCCACGAAGCGCCTCGCCACGCTTGCTCGTACTGTCCAATGCGATTCGTCCAACGTTCCAACATGCTTCGCCACGAACGCAGACACACGGGGGAAAGACCTTATGCTTGCCAACACTGCCCTAGGACGTTTTCTGATAAAGGCGCCTTGAATTCACATATGAGAACTCATATAAAAACCACATCGTTCGCGTGCGTTTATTGCGGACAGACTTTCGTGCAGAAATCCAAGCTCACTTACCACATTCGAAAGCACACAGGAGAAAATTTGGAAACCTGTTCCATTTGTTCGAAGACATTTACCAGCGGGTGTTCTCTGCGGGAACACATGATGGTGCATCAAAAACAGAAGATGAAGAAAACGCTGAAATGCCCTCTTTGTAAAAAGATGTACTCGATCGAGCGCGATATGATGCGACACATGAGGACTGCCCACACGGGCAACCAGTTCAAATGCCCGCTCTGTCGCAAGACGGTCAGCTCGCCTAGCTCCTTGCGGGAGCATGTGCTGACTCACAGCCGCGTCAACACTTACCGGTGCAAGATGTGCCCTAAATCGTACCACGTAAAGAAGTCAATCCTCAAGCACGTAGAAACGCGACACGGTCTGAAACCGCCTCTCAGTGAGAAAATACACTACTATCAACTCGACCCTAAGGACTGCCAACTCGGGTTAGACGACGAAGTCTTGGACCGAATATTCACGAAGCTCAGACCGCAAAGACACCCAGAAGCCATTATAGGAGACTTTGTCAATTTCAACAACGATTTTCAGCAAGATGAAAGTGAGCACAATCCCATACAAAATGAGAATGAAGAAGGGAAAACCATGGAAAATACTATCCAAGTGAAGTTGGAGCCagttgatgatgataatgaggTGCCTCCGCCTCCTCCGGACTTTGTAAATGTGAAGATAGAAAATGTGGAGGAGGATCAGAGATCTGATGCGGAAATGTCATGA
Protein Sequence: MSSEDSEDEPLSVLAAKKSDNFGDSHSVSKIGGSLKLKIKKENISTPPVNPEWFINRNRIVIHYVIDHKKDYCGICRYLVPNRETWQEHQKFHTPWKCSQCTQRFPTQLMLREHFSDAHNLVHCRFCYLRLPNDDQYYRHLLEKHSVTNTSSINEDCLWDFECKGDQKFICLLCSKSVDVGKQFADHFMSFHHFTLKCFMFFIAGIDLPFKVKGAELSPEFVDTQLKAYSTFGYVDFIKSLKFKEESVTVTEEIPITVDCQPELKELSESFDDTEDLKLCEEIRGYRGVQDFDVTLVEVITMQKCYIDYVNATLNDINSNEMPLSSEIMYTTGNIESKPINCCLCMEVFMRTTNFETHMNKAHGVKSVPVYWCRVCAAVFDNLSELETHSTQELGEFDNLWICQFCDKEFDGREDTRRHLTEHWDEIAYDNCFSPHLGFKCKFCSTLFWNETDREAHHVKVHSQMNKSDFYNCTLCGEVFGDKLFFIHHYFEKHDSDMSYLLKCCVCSIVLDNVEDMRSHFEEYHADAKKIFCCLDDCKYRPFSQRKSFYIHLKTFHDPSSRQQRPVTCELCGMEFANSKSCSLHVSRVHGPGRFKCTLCDEVLHTNDERKIHYLIRHPGRAQFQCGVCDKYFQYKSSLYIHRQEHSPHKKDYTCAYCGKNFLKKDSYREHIMIHEAPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFSDKGALNSHMRTHIKTTSFACVYCGQTFVQKSKLTYHIRKHTGENLETCSICSKTFTSGCSLREHMMVHQKQKMKKTLKCPLCKKMYSIERDMMRHMRTAHTGNQFKCPLCRKTVSSPSSLREHVLTHSRVNTYRCKMCPKSYHVKKSILKHVETRHGLKPPLSEKIHYYQLDPKDCQLGLDDEVLDRIFTKLRPQRHPEAIIGDFVNFNNDFQQDESEHNPIQNENEEGKTMENTIQVKLEPVDDDNEVPPPPPDFVNVKIENVEEDQRSDAEMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00827279;
90% Identity: iTF_00827279;
80% Identity: -