Basic Information

Insect: Hypomecis atomaria
Gene Symbol: -
Assembly: GCA_964007245.1
Location: CAXFZN010000006.1:68460-70962[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.4 2.2e+02 3.8 0.6 12 23 14 26 13 26 0.93

2 20 7.3e-06 0.00066 21.2 1.6 1 23 33 55 33 55 0.97

3 20 2.4 2.2e+02 3.8 0.6 12 23 61 73 60 73 0.93

4 20 7.3e-06 0.00066 21.2 1.6 1 23 80 102 80 102 0.97

5 20 2.4 2.2e+02 3.8 0.6 12 23 108 120 107 120 0.93

6 20 7.3e-06 0.00066 21.2 1.6 1 23 127 149 127 149 0.97

7 20 2.4 2.2e+02 3.8 0.6 12 23 155 167 154 167 0.93

8 20 7.3e-06 0.00066 21.2 1.6 1 23 174 196 174 196 0.97

9 20 2.4 2.2e+02 3.8 0.6 12 23 202 214 201 214 0.93

10 20 7.3e-06 0.00066 21.2 1.6 1 23 221 243 221 243 0.97

11 20 2.4 2.2e+02 3.8 0.6 12 23 249 261 248 261 0.93

12 20 7.3e-06 0.00066 21.2 1.6 1 23 268 290 268 290 0.97

13 20 2.4 2.2e+02 3.8 0.6 12 23 296 308 295 308 0.93

14 20 7.3e-06 0.00066 21.2 1.6 1 23 315 337 315 337 0.97

15 20 2.4 2.2e+02 3.8 0.6 12 23 343 355 342 355 0.93

16 20 7.3e-06 0.00066 21.2 1.6 1 23 362 384 362 384 0.97

17 20 2.4 2.2e+02 3.8 0.6 12 23 390 402 389 402 0.93

18 20 7.3e-06 0.00066 21.2 1.6 1 23 409 431 409 431 0.97

19 20 2.4 2.2e+02 3.8 0.6 12 23 437 449 436 449 0.93

20 20 1.9e-05 0.0017 19.9 0.3 1 21 456 476 456 477 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.4	2.2e+02	3.8	0.6	12	23	14	26	13	26	0.93
2	20	7.3e-06	0.00066	21.2	1.6	1	23	33	55	33	55	0.97
3	20	2.4	2.2e+02	3.8	0.6	12	23	61	73	60	73	0.93
4	20	7.3e-06	0.00066	21.2	1.6	1	23	80	102	80	102	0.97
5	20	2.4	2.2e+02	3.8	0.6	12	23	108	120	107	120	0.93
6	20	7.3e-06	0.00066	21.2	1.6	1	23	127	149	127	149	0.97
7	20	2.4	2.2e+02	3.8	0.6	12	23	155	167	154	167	0.93
8	20	7.3e-06	0.00066	21.2	1.6	1	23	174	196	174	196	0.97
9	20	2.4	2.2e+02	3.8	0.6	12	23	202	214	201	214	0.93
10	20	7.3e-06	0.00066	21.2	1.6	1	23	221	243	221	243	0.97
11	20	2.4	2.2e+02	3.8	0.6	12	23	249	261	248	261	0.93
12	20	7.3e-06	0.00066	21.2	1.6	1	23	268	290	268	290	0.97
13	20	2.4	2.2e+02	3.8	0.6	12	23	296	308	295	308	0.93
14	20	7.3e-06	0.00066	21.2	1.6	1	23	315	337	315	337	0.97
15	20	2.4	2.2e+02	3.8	0.6	12	23	343	355	342	355	0.93
16	20	7.3e-06	0.00066	21.2	1.6	1	23	362	384	362	384	0.97
17	20	2.4	2.2e+02	3.8	0.6	12	23	390	402	389	402	0.93
18	20	7.3e-06	0.00066	21.2	1.6	1	23	409	431	409	431	0.97
19	20	2.4	2.2e+02	3.8	0.6	12	23	437	449	436	449	0.93
20	20	1.9e-05	0.0017	19.9	0.3	1	21	456	476	456	477	0.95

Sequence Information

Coding Sequence: ATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGAGGCGGCACATGCTCGTAAGTACAACCTCCTGCTGCACCAGCGGCGCGTCCACTCCGTCACGCCGGTCAGCTACGACTGCGGGGTCTGCGGGAACAGCTTCTCGTCGCATAGCAACATGA
Protein Sequence: MRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLQHEAAHARKYNLLLHQRRVHSVTPVSYDCGVCGNSFSSHSNMRRHMLVSTTSCCTSGASTPSRRSATTAGSAGTASRRIAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00826048;
90% Identity: iTF_00825996;
80% Identity: iTF_00825996;