Basic Information

Insect: Hypomecis atomaria
Gene Symbol: clz9_4
Assembly: GCA_964007245.1
Location: OZ023284.1:4629316-4631709[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 9.4e-10 2.1e-07 31.7 0.2 3 44 17 59 16 60 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	9.4e-10	2.1e-07	31.7	0.2	3	44	17	59	16	60	0.95

Sequence Information

Coding Sequence: ATGCCTCGTGCCTATGTAAGAAAAACCGATCGAAGTTCCTATCCGAAAGAAAAACTATTAGAAGCCGTCAGGGCCGTTAAAAGTGGTGCCTTGTCAGGTTATGCAGCCTCAAAACATTATGGAATACCAAGAGCGACCATAATCAATCGGGTTTATGAGCGTAAAGGTATGAAGTCAAAAACTTTGGGAAGACCCACGGTTTTATCGCGAGATGTAGAAGAAAACTTGGTAAAAAATCTGCATGCGATGGAGAAATATGGTTTTGGCTTGACAAGAAAAGAATTGATGGAGACTGTGGGACAATATGTGACAATGAAAGCTGTGAGCAATCCGTTCAAAAACGGAGTTCCTGGGGAAGACTGGTTCCTCTTGTTTAAGAAACGACATAATATCTCTGTGAAAAAACCGCAGCCGGTAGAGTATGCCCGAAAAACTGCGTGCAGGCCTAATGTAATATACCCATATTTTGATTTGCTCGAAGAAACAATCAACCAACTAGATCTTCGCGACAAACCATCCCATATTTGGAATGTAGATGAGACGAGTATCAGCAAAGACCCCTCAAAAGCAAAAGTGGTTGGACTGAAAGGATTTACTTCCACAAGAACCGTATCATCTCCTGGTAAGGATAACACTACCGTCTTGCTGGGGTGTAATGCTCTTGGCGAAAAAACTCCCCCGTTAATTATTTACAAGGGTAAAAACGTATGGGACGAGTGGACATCACCAGAAGCGTACCCAGGAACAGCATATGCCGCAACAGCTAATGGGTGGATGGAGACAGCTGTTTTTGAGGCATGGTTTGAGAAAGTTTTTCTGCAAACTGTAGGACAAAAGCGGCCCATACTTTTAATATACGATGGGCACTCCACCCATGTAGGAATAAATATCATTGAGAAGGCCCGAGCAGCACAAATAACGATTTTGAAGATTCCTCCTCATACCAGCGATGTGTTGCAGCCGTTAGATTTAGCTGTGAATAAACCTTTTAAGGATAGATGGGATGCAGCTTTGGTCAAATGGCAACGATTAAACATTGGAAAGACACTGCCAAAAAAAGAGTTCGCGAAAATCCTTGGCCAAATTTGGACTGCAATAGATCCTCATGTGTGTGCAGCTGGATTTAAAAAAGCGGGCATTTACCCACTTAACAAAGAGATTGTTCcagaatttaaatttaatcaattgCTTTTGCGAGAGTGGAAGCAAACAACAGTGCCAATGGTTAACAATTTTGTCGTCGATGAAACAAAGTCTTCAGACATATGTACTTTAAGACAAGGTCAGCAGAACAGTCAACCAATTAGACTTTCATGTCCAGATATATTACTTAACATCGCTTTGACAAGGATTAATTCCTGTATATATCAGTCACACAGTCAAACACAGCAAAGGCAGACAAATTGGAATGATTTAGCAGGATGTTCAAAAAATGTCCCTGTAATAGAAAATCAAAAGCCTAAGATACGTATTCTTGAGGACCGGGCAATCACATTTGAAGATTTATTACTCATGAATATTAAAGCAGGCACAAGTAATaagataaaaagaaaaagaattgcCCCTGGTGCTGAAGTAATTACGCACGACGATGTTTACCAAAGGTGTAAGCAATCAgatatagaaaaaaaagaaaaattgaagCAAACACAAGAAAAGAAGTCCAAAGCAATgataaaacaagaaataaagCAAAAATCCAAATTGATGTGTACTAAAAAAGAGAGTAataagaaattttcaaaaaataagaaGTCAAAAGTACTAGCTGAATCATCCAGCGAAAGTGAAATAGAGATGGAAATAAGAGATGAAAGTGACGATGACGAAGACTTTGAACAGTATCGCAAAAACCTTTGTATGCAAGATgaagaaaagaaagaagaagaagagatcgATGAATTAAATAGGCATATGGAGGAAGAGAAAATTAATAAGGAAACACGGATGCGAGATATGGTAATGGAGGATGAGAGTAAAGAAGATAAAAACACGCCAAAAATAGAAGACTTTAGTTTAAATGTTGTTCAAAACGATTGGCTTTTGGTTAAATTTTGCACAAAGCGATTTGTAAAACATTACGTTGGAGTAGTACTACGCATCACAGATGATAGAGTTCCAGTTGTCCAATATGTAAGAAAGACAGTGACTAAAGCAGAAGACCAGACAGTGTTCACTTATCCCGCTTTTGAAGATATATCTGAAGTGAAGCATCAAGAGGATGTAGTTGCAAAATTGCCTAAGCCAGTTATTGGCCGTAGAGgccaaataatttttaaaatgtcttTCAAAAGTTTTAATGTTCAGTAA
Protein Sequence: MPRAYVRKTDRSSYPKEKLLEAVRAVKSGALSGYAASKHYGIPRATIINRVYERKGMKSKTLGRPTVLSRDVEENLVKNLHAMEKYGFGLTRKELMETVGQYVTMKAVSNPFKNGVPGEDWFLLFKKRHNISVKKPQPVEYARKTACRPNVIYPYFDLLEETINQLDLRDKPSHIWNVDETSISKDPSKAKVVGLKGFTSTRTVSSPGKDNTTVLLGCNALGEKTPPLIIYKGKNVWDEWTSPEAYPGTAYAATANGWMETAVFEAWFEKVFLQTVGQKRPILLIYDGHSTHVGINIIEKARAAQITILKIPPHTSDVLQPLDLAVNKPFKDRWDAALVKWQRLNIGKTLPKKEFAKILGQIWTAIDPHVCAAGFKKAGIYPLNKEIVPEFKFNQLLLREWKQTTVPMVNNFVVDETKSSDICTLRQGQQNSQPIRLSCPDILLNIALTRINSCIYQSHSQTQQRQTNWNDLAGCSKNVPVIENQKPKIRILEDRAITFEDLLLMNIKAGTSNKIKRKRIAPGAEVITHDDVYQRCKQSDIEKKEKLKQTQEKKSKAMIKQEIKQKSKLMCTKKESNKKFSKNKKSKVLAESSSESEIEMEIRDESDDDEDFEQYRKNLCMQDEEKKEEEEIDELNRHMEEEKINKETRMRDMVMEDESKEDKNTPKIEDFSLNVVQNDWLLVKFCTKRFVKHYVGVVLRITDDRVPVVQYVRKTVTKAEDQTVFTYPAFEDISEVKHQEDVVAKLPKPVIGRRGQIIFKMSFKSFNVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00407506;
90% Identity: iTF_00407506;
80% Identity: -