Hato029826.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023301.1:19377867-19379789[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-11 2e-08 35.0 0.0 1 37 15 51 15 57 0.95 2 2 3.5 7.8e+02 1.1 0.0 22 31 142 151 130 153 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTATGTCAGATCCACCTTACGGGCATCCTGGTCTGAAACTGATCTGAATGAGGCTatgcaaaaagttcgtcaaaaAGAAATGGGTGTTAATGAGGCTGCTCGAACGTACAATATTCCTTCTAGAACACTTAGAAGACACATTTTGGCGGGAACATTGAAGGTCTCACTCGGAAGAAAACCAGTTTTTACCCAAGCACAAGAAAAAAAGCTGGTTGCTCACATAAAACAACTTGAAAAAGTCGGGTTTGCTCCTGATCGGAAGGACGTTAAAGAAATGGCTTATCAATTAGCCCTTAGGCTTAACATCAAACATGTTTTCTCTGATAAATGTGAAAAAGCTGGCGACGTTTGGTTTAATGGATTTTTGCAAAGGAACCCCGAGCTGAGCCAGCGAAAATCCGAAGGCTTATCTCTTGCTAGAGCATACGGTGTTAATCGTTCAGATGTCCAGGATTTTTTTACATTGCTGGCCGAAATTTACAACGAGAATGATCTTAGCTCACATCCTGAGAAAATATTTAACATGGAcgagactggtatccaagtaAACAATAAACCTGGAAAAGTAATTGCAACCAAAGGCGCTAAGGACGTGTACACCTTGACAAGCAGTGAAAAAGGAGAAAATGTTACAGTAATAGCATGTTGCAACGCGCAAGGAAATTTTCTTCCACCTGTTTTGATCTACAAAGGTACATACAGTAAGCCTCAATTTTCGGAGGGTTTGCCACCAGGATCACAAgtgtttatgaataaaaaatcatcctaCATAAACACTGATCTTTTCATGAAATGGTTCGAGGAGATTTTTTTGCCAGCAAAAGGCCCAGGAAAAGCATTACTGATTATGGACGGGCACAGTTCTCACAGCAATAACATCAACTTATTGGAAGTGGCTAAAGCTAATGATGTGACATTATTATGCTTTCCCAGTCACACTACTCATGCAATGCAACCGCTGGACAGAGCTTTTTTCAGACCTTTTAAAGTTTACTTTGCGCAAGAAGCCAAATCATGGATGATCATGAACAAAGACAAGAAACTTACTAGGTACGATGTATCTAAACTTATTGGCAAAGCTTGGGGCAAAGCAGCAAGTGTATCAAATGGAGTTTCTGCTTTAAAATCTTGTGGGATATACCCTTACGACCCAAATGCTATACCTGAGCATTACTTCGCTTTATCTGATGCCTTACGCGAGCAGGATCTCATTGCAAATGAACAAAATGAAGGAGCTATAAGACCTTTCTACATGTTAGAAAATAATTCAGAGATTCAACAAGATGTGGACTCTGTGATAGTATCATTGATGGATACTTTGGAAAACTCATCATCGGCTTTTCCGGCACCGCCATCACAAGCAACACCTCAAAAAATATGCGCACAGCCATCCACTTCTAAGACCCCTGAAAAGACGCCATCAAAAGTTTTGGCAGAAATCTATCCTGTGCCAAAGCTACCCGAAATGGTTttaaagaagaaacaaaaagCGGTGATCCTGACATCGCCAGAAAATATTCAAAAGCGAAAGCtaatacaagaaaacaaaaaaccaACGGTAAAAAGTGAATCATCCAaagaaaaatgcaaaaaaaatgttataaaagatatgaaaagaaaaaagccagcaaataaaaaaccaaagaaaaaaaaacctacattaGTATCATCGGATAGTGAGAGTGAAGAAAACAAGAAGCAAGAAAGTTCTGATGAAGATATATCAGCAGAAGACGAAGAAAATAGATGTGTTGAATGCAcggaaaattatttcaaaacaacATCCACAGAGGATTGGATAAAGTGCTCCTCGTGCTCCTTTTGGATGCACGAGTTCTGTACCATGTACAAACCGCTATGTAACAGCTGTGGAAAAAAGGCTAGAAGAGAAGAAATTAGAAAGAAGAAATAG
- Protein Sequence
- MPRNYVRSTLRASWSETDLNEAMQKVRQKEMGVNEAARTYNIPSRTLRRHILAGTLKVSLGRKPVFTQAQEKKLVAHIKQLEKVGFAPDRKDVKEMAYQLALRLNIKHVFSDKCEKAGDVWFNGFLQRNPELSQRKSEGLSLARAYGVNRSDVQDFFTLLAEIYNENDLSSHPEKIFNMDETGIQVNNKPGKVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMKWFEEIFLPAKGPGKALLIMDGHSSHSNNINLLEVAKANDVTLLCFPSHTTHAMQPLDRAFFRPFKVYFAQEAKSWMIMNKDKKLTRYDVSKLIGKAWGKAASVSNGVSALKSCGIYPYDPNAIPEHYFALSDALREQDLIANEQNEGAIRPFYMLENNSEIQQDVDSVIVSLMDTLENSSSAFPAPPSQATPQKICAQPSTSKTPEKTPSKVLAEIYPVPKLPEMVLKKKQKAVILTSPENIQKRKLIQENKKPTVKSESSKEKCKKNVIKDMKRKKPANKKPKKKKPTLVSSDSESEENKKQESSDEDISAEDEENRCVECTENYFKTTSTEDWIKCSSCSFWMHEFCTMYKPLCNSCGKKARREEIRKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091646;
- 90% Identity
- -
- 80% Identity
- -