Hato029525.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023301.1:13543107-13543994[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-11 7.1e-09 36.4 0.0 1 37 15 51 15 57 0.95 2 2 1.3 2.9e+02 2.5 0.0 22 31 142 151 128 154 0.84
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTATGTCAGATCCACTTTACGGGCATCCTGGTCTGAAACTGATCTGAATGAGGCTatgcaaaaagttcgtcaaaaAGAAATGGGTGTTAACGAGGCTGCTCGAACGTACAATATTCCTTCTAGAACACTTAGAAGACACATTTTGGCGGGAACATTGAAGGTCTCACTCGGAAGAAAACCAGTTTTTACCCAAGCACAAGAAAAAAAGCTGGTTGCTCACATAAAACAACTTGAAAAAGTCGGGTTTGCTCCTGATCGGAAGGACGTTAAAGAAATGGCTTATCAATTAGCCCTTAGGCTTAACATCAAACATGTTTTCTCTGATAAATGTGAAAAAGCTGGTGACGTTTGGTTTAATGGATTTTTGCAAAGGAACCCCGAGCTGAGCCAGCGAAAATCCGAAGGCTTATCTCTTGCTAGAGCATACGGTGTTAATCGTTCAGATGTCCAGGATTTTTTTACATTGCTGGCCGAAATTTACAACGAGAATGATGTTAGCTCACATCCTGAGAAAATATTTAACATGGAcgagactggtatccaagtaAACAATAAACCTGGAAAAGTAATTGCAACCAAAGGCGCTAAGGACGTGTACACCTTGACAAGCAGTGAAAAAGGAGAAAATGTTACAGTTATAGCATGTTGCAACGCGCAAGGAAGTTTTCTTCCACCTGTTTTGATCTACAAAGGTACATACAGTAAGCCTCAATTTTCGGAGGGTTTGCCACCAGGATCACAAgtgtttatgaataaaaaatcatcctaCATAAACACTGATCTTTTCATGAAATGGTTCGAGGAGATTTTTTTTGCCAGCAAAAGGCCCAGGAAAAGCATTACTGATCATGGACGGGCACAGTTCTCACAGCAATAA
- Protein Sequence
- MPRNYVRSTLRASWSETDLNEAMQKVRQKEMGVNEAARTYNIPSRTLRRHILAGTLKVSLGRKPVFTQAQEKKLVAHIKQLEKVGFAPDRKDVKEMAYQLALRLNIKHVFSDKCEKAGDVWFNGFLQRNPELSQRKSEGLSLARAYGVNRSDVQDFFTLLAEIYNENDVSSHPEKIFNMDETGIQVNNKPGKVIATKGAKDVYTLTSSEKGENVTVIACCNAQGSFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMKWFEEIFFASKRPRKSITDHGRAQFSQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032834;
- 90% Identity
- -
- 80% Identity
- -