Hmis008513.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000009.1:5920155-5926770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-05 0.0012 20.0 3.2 1 23 257 279 257 279 0.98 2 11 0.24 21 6.6 1.6 1 23 287 310 287 310 0.93 3 11 0.0017 0.15 13.3 2.8 1 23 407 429 407 429 0.99 4 11 2.2 1.9e+02 3.6 4.1 2 23 438 460 437 460 0.95 5 11 0.0063 0.56 11.5 2.6 1 23 464 486 464 486 0.98 6 11 0.00059 0.052 14.8 2.0 1 23 491 514 491 514 0.97 7 11 0.011 0.95 10.8 1.8 3 23 520 541 519 541 0.95 8 11 0.021 1.8 9.9 0.0 2 20 560 578 559 580 0.93 9 11 5.8e-06 0.00051 21.1 1.1 1 23 651 673 651 673 0.98 10 11 0.00045 0.039 15.2 1.9 1 23 679 701 679 701 0.96 11 11 1.8e-05 0.0016 19.5 2.9 1 23 707 730 707 730 0.98
Sequence Information
- Coding Sequence
- ATGTTTGCTTTAAAAGCATGCACAGTGTGTCTGAAAACAGACGTGAAAGTATTCAGTTTGAACATAGGACAACTAAGACATGAATACAATTTAGTATCTGGTTTAATGACTCACAGTAAAAATGGTTTACCTGAGTATTTATGCTATCAATGTGTTGGGTATGTCAAAAACTTCATTAGATTTCGTGATAAATGCCAACGTACCTACTATGCTTTACAAGAAATTCTAGATCGCGATAAAAAGATAACACAGTCTATTATTGAAGAACTAGACTCCAATGTGCTGAATATTGAGCCTACTATATCCTACCTAGCTGCTGATCACATCAGaactaaatatgaaaatgtaaaacataaaaatgtgaAACAGAATTATGTTGATCTAAAACAACAAGAAAACATAACTGTTGTTCAATATGGAACTACATCCGATGATCTAATATTTGAAGTGCCTAAAAAGAAGCCTAAACTGTGGATAGATTTAGAAGATAATATTAAACAGGAAGAGGATCCTATTGTCAAGAATTTCGAATCATTCAGAACAGAAAGCCCCGACCTTGATACAAAACCGAATGATGACAGTTTCTTTGATAGCAATTTTGACGATTGTGATGAACCACAATTAATAATAGATAATgacgaaaaattaaatattcaagctGATGTCAGTGGTGTCAATTTAGAAGAGGAATATGCAACCATGTTGCCTATATCTGTGAAGGAAGCTAAAGCTGTTGTTGATGTGTACAAGCTACTTGCACAAGGCAAGTTTTCATGCAAAGTCTGCGGAAAGACATATAATAGTGAATGTCGATTGAAAGCGCATATGAGAATGCATGAAATGAGTATAAATGGTACTTTCTTCTGTGCGTTATGCAAATATTATTACAGATCAGAACTTCTACTGAAAAGTCATATGACAGAGAAACATATGTATAAGTATTTGTGTAAGAAGTGTCCTGAAGTAAATTTTGATAGACATTCCGCCAAGAGACATTATTATTGGGGCCATTTCCAAGAAATCTCCAATAAAGGCTCTAATTGGTCACGGTCAACAAAAGTAACTAAGGGAGGGAGAAAGAATAAATCTGCTATTCGCCGATTAGGAACAAAGCAAGAAGTACCACATGACTTCCCAATACAATCTGCGGTAAGCCAGGCGGAACAATATGCTTTGGTTAGAGACAGACAAAAGACGAAGAACTACATTGACTCACCGTTCAAGTGCGAATATTGCTTTAAAGGCTTTAGAGTTGTAACAACATTTGAAACACATTTGAAAAAACATGAtcctGCTTTGTCTGGTAAATTACAATGTGATGCATGCAAAATATGCTATCCGAGCACTGGAAAGATGTACAAACACATGACGAGATGTCATATCTTCAAATACTCGTGTCAAATGTGCGGCTACACATGCTTCAATAGGGGTCAAGCTAAAGTTCATTACAGATGGCACAAAAAAGTCACATATCCGTGTCCACATTGTAAGAAAGAATTCTCtAAGGAGTCAACAAAGCTCGGTCACATTCGTAAGATGCATCCATCCACCAACATCTGCAACATATGTGGACACAGCTTTGTTAGCGTGACTGGCCTACACATTCACAAGCTGAAAACTCATAGCAAGGAggagATAGAAGAGAACGATGGTAAAGTGGACACGTCGAACCCGCTGTACTGCGCGGAGTGTGGGGTTCAATTCCGGGACGAGGACGCTTTCACCACTCACCTTGGATCCTCCAATAAGCATGCTGATACCAACCGTGCGATCACGAAGCTGGGCGCGGAGGGCGAGGGCGAGGGCGCGCGCCTCACGGACAAGGGCGTCGTCAACATGGGCCGCGCCACCTCCTCGCACTGCGACATCtgTAACAAGTACCTGCTGAACGACACGCAAGCAGTGCGCCACTACGACGCCGAGCACCCCGGCGCCCCCTACCTGAAGCGCTACATGTGCGACATCTGCGGGCATAAGACTAGGCAATACGCCAATCTCGTGGTTCACATGCGTACTCACACTCAAGAGAAGCCATACTCGTGCCCGCACTGCGACAGACGATTTAGTATGCAAAACAACCGCGACCGACATCTTGTTGTACACACAGGTGAGAAGAAATACCAATGCCCACATTGCAACCGTCGCTTCTCACAGAAGAACACGGTCAAATTGCATGTGCAGACTGTGCACCTGAAGATTCCCTACCCTCCATGGAACAAGAAGAACCGCAAGCGGCGTCGCGAGCCCTCACCCCCGTCCCCCGCCCCGTACAAGCTGCCGCTGGACTCTCACGGGAACTACCTCAGTGCCTACATTGACACCACAAACAAGGTCTGCGGAGCCAATTAG
- Protein Sequence
- MFALKACTVCLKTDVKVFSLNIGQLRHEYNLVSGLMTHSKNGLPEYLCYQCVGYVKNFIRFRDKCQRTYYALQEILDRDKKITQSIIEELDSNVLNIEPTISYLAADHIRTKYENVKHKNVKQNYVDLKQQENITVVQYGTTSDDLIFEVPKKKPKLWIDLEDNIKQEEDPIVKNFESFRTESPDLDTKPNDDSFFDSNFDDCDEPQLIIDNDEKLNIQADVSGVNLEEEYATMLPISVKEAKAVVDVYKLLAQGKFSCKVCGKTYNSECRLKAHMRMHEMSINGTFFCALCKYYYRSELLLKSHMTEKHMYKYLCKKCPEVNFDRHSAKRHYYWGHFQEISNKGSNWSRSTKVTKGGRKNKSAIRRLGTKQEVPHDFPIQSAVSQAEQYALVRDRQKTKNYIDSPFKCEYCFKGFRVVTTFETHLKKHDPALSGKLQCDACKICYPSTGKMYKHMTRCHIFKYSCQMCGYTCFNRGQAKVHYRWHKKVTYPCPHCKKEFSKESTKLGHIRKMHPSTNICNICGHSFVSVTGLHIHKLKTHSKEEIEENDGKVDTSNPLYCAECGVQFRDEDAFTTHLGSSNKHADTNRAITKLGAEGEGEGARLTDKGVVNMGRATSSHCDICNKYLLNDTQAVRHYDAEHPGAPYLKRYMCDICGHKTRQYANLVVHMRTHTQEKPYSCPHCDRRFSMQNNRDRHLVVHTGEKKYQCPHCNRRFSQKNTVKLHVQTVHLKIPYPPWNKKNRKRRREPSPPSPAPYKLPLDSHGNYLSAYIDTTNKVCGAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00986621;
- 90% Identity
- iTF_00843823; iTF_01081027; iTF_01506695; iTF_01508392; iTF_01080211; iTF_01079353; iTF_01507516;
- 80% Identity
- -