Hmis027825.3
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- -
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000203.1:4041-6812[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-10 4.5e-07 30.2 0.1 1 39 16 55 16 59 0.93 2 2 1.3 5.8e+02 1.1 0.1 23 39 827 843 827 845 0.89
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGCACCTCTTCAGGGGCCACTTCGTATACTAAAGAAGCGCTTCAGTTGgccatacaaaaaataaacaataaagagCTCACCTATGCAGCCGCTTCAAAATTGTATGGCATACCTACATCAACACTTAGTGATAGAGTCCTGAAGAAAACAGCAGTAGTAAATAATACCCTTGGCCGACCAACAGCAATCCCAATGACGTTAGAATCTAAACTAGCAAACTGCCTACGAATACTGGAAAAGTGGGGCTGGGGGTTATCAAGAGAAGAGGTACTGGATGTCACACaggattttattaaaagaaataaaatacaaagccCCTTTAAAGATGACAGACCAGGAGCGGACTGGTGTATTTCTTTTCGTCATCGACACAATTTGTCCATAAAAAAGCCGCAACCTGTAGAAtaccttagaaaaaaaatgacagATCCGTTTATTATTCATGAATATTTTACTCTTCTCGAAAAGACACTTCACGAGTTAAATGTATCGAATCCTAAGCAAATCTGGAATCTCGATGAAACTTCAGTTTGTCTCGATCCCACAAAAACTAAAGTTGTAGGTGCCAAAGGGGAGCCTTGTACACGAACAACGCATGGAAGCgcgaaagaaaatattacagtGTTGACTACTGTAAATGCAGCCGGACAGAAATTAGACCCCTTGATTGTATTCAAAGGCAAACATATGTACGAACAGTGGATGTTACAGGATCCTGAAAAATACGATTTCAATCTTGCGTATGCAGCCAGCAAACGAGGCTGGATggaaactaatattttttatgattacatgttaaaagtaattatacCTAATTTGGGTGAAGACAGGCCTGTATTATTACTATATGACGGACACGTCAGTCATGTCGATGAAAAAGTGGTAGCTTTAGCAGTAGAGAACAATATCACCATATTGAAGTTTCCTGCACACACATCACATCTATTGCAACCGCTAGACTTGGCTGTGttcaaatcatttaaaacaatttggGATAAAAACCTTGTAAAATGGCAACGACAGAATGTTGGAatcaaattaagaaaacaaagtTTTGCTGAAATGTTTGCCAAAGCGTGGCAGGAAACTAAACCAGAAGTCATACGAAATGGTTTCAAAAAAGGTGGCATTTACCCTTTTAATCCTGCGATTATACCAAAGGACAAATATGATCCAGCAGCTTATGCGCGATGGCAAAAGCACATGGCTATAGTTACTTTTGAACAACCGAAAACTCTAACACTgatatgtgtagataaaattaataaaataatgataaataacaaCTCTATTCCTATTCTAAATAATGATATTGCTTACTCTGAAATGTCGGATTCATCTACTTTAAAACATGGAAACAGCTCTCTACAACCACTGACAACTTTCGAACAATTGCTTCTAGAAAAAGTTTCGCAACATCCTCAAAACTCTAAGAACAATATAGCTGTTAAGTTAAAACGAGTCGCGAAAGGCGCAGAAGTGATTACAAAAACTTTCCTAGAAAAGCAGCAAGAAATAGAATTAACAGTGGAAAAAGAAATGCAGAAGACCAAAAAACGGAAACCAAAAACAGTACTTCAATCTAAAAATGTTGCATTTAATTTTGCACCAGGACCGTTTAAAATTGaagataaaaacataaaaagaaaggAAACTGTAACGACTGCATCAGTATTGGCTAAAAATAACAAGACTGACGTGTATGTTTCTAAAAAGGGCAAGGGAATAGGTAAAAAAACACGTACTGGCAAGGAAAATGATTTGAAAGTGGACAAGCATGCTAAACAAAAGGGAAAAAAAGCAATACataaattagataataaatcTGATCAAAGTACATCTACAAAAACAGCTCTAAAAAAGCGAAAAAGATCAAATAGCAGCGTTACCACAGTCGAAAGAGTTGAGATGAGTGTGCATAGTGATTCTGACTTATTAGATGGTTTAAGCGATATATTATCTGACTGTGATATATGGActgactttaattattataacggaAACAAGACTGACTTAGAATTAGAAGCAGGAGGACAGCAAATTGAACAAATAGTTGAAGGAATGGACGACGTTGATAATAATCAAGAGAGAAAAGCAAGTCAAAGGGACCACAAAACGTGTGAAGAAAAATGTGCGGTAGAAGAAATTCGGACCAAAGAGACAAACTTTcaggtaaataataataataaagtaactaTATTATCGTCTATTAAAATCACACCACAAAATCAGGTTTGCTATAAAATTGTACCCGAAATATTACAACTAAAGCCAATTGATAAAgatgtagatatatttataaaccaaaAACGAACATTGTCACATAATACAAGCGCATCTAATATaccaaagaaaaaaacaaagaaagttACTACAAATGAGCAAAAGGATTGCAGGGAAAACTCAAAGATAGAAATTGATAAAGATGATGattttagaacaaaatattatagtgATAATGCGAAGACATACAATATTGGGGATACAGTTCTCGTTAGATATTTCAAACGAACTTGGATATACTACGTCGGtgtcattgaaaataattatatgagtTCAAACCCAAATATGTATAACATAACATTCTTCAAAACGATTGGCAAGAAAAATAACCTGAAATTTGTTATTCCTAAGCGTAAAGATCAAGATAACGTACCAGATTCAAATATAGTTAAGGTGATAGAACTACTGCAGATAAATGAGGATCCCGTGGAGTACACACTTATGAATGACGAAGATgagaatttcttttaa
- Protein Sequence
- MPRKYSRTSSGATSYTKEALQLAIQKINNKELTYAAASKLYGIPTSTLSDRVLKKTAVVNNTLGRPTAIPMTLESKLANCLRILEKWGWGLSREEVLDVTQDFIKRNKIQSPFKDDRPGADWCISFRHRHNLSIKKPQPVEYLRKKMTDPFIIHEYFTLLEKTLHELNVSNPKQIWNLDETSVCLDPTKTKVVGAKGEPCTRTTHGSAKENITVLTTVNAAGQKLDPLIVFKGKHMYEQWMLQDPEKYDFNLAYAASKRGWMETNIFYDYMLKVIIPNLGEDRPVLLLYDGHVSHVDEKVVALAVENNITILKFPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGIKLRKQSFAEMFAKAWQETKPEVIRNGFKKGGIYPFNPAIIPKDKYDPAAYARWQKHMAIVTFEQPKTLTLICVDKINKIMINNNSIPILNNDIAYSEMSDSSTLKHGNSSLQPLTTFEQLLLEKVSQHPQNSKNNIAVKLKRVAKGAEVITKTFLEKQQEIELTVEKEMQKTKKRKPKTVLQSKNVAFNFAPGPFKIEDKNIKRKETVTTASVLAKNNKTDVYVSKKGKGIGKKTRTGKENDLKVDKHAKQKGKKAIHKLDNKSDQSTSTKTALKKRKRSNSSVTTVERVEMSVHSDSDLLDGLSDILSDCDIWTDFNYYNGNKTDLELEAGGQQIEQIVEGMDDVDNNQERKASQRDHKTCEEKCAVEEIRTKETNFQVNNNNKVTILSSIKITPQNQVCYKIVPEILQLKPIDKDVDIFINQKRTLSHNTSASNIPKKKTKKVTTNEQKDCRENSKIEIDKDDDFRTKYYSDNAKTYNIGDTVLVRYFKRTWIYYVGVIENNYMSSNPNMYNITFFKTIGKKNNLKFVIPKRKDQDNVPDSNIVKVIELLQINEDPVEYTLMNDEDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677509;
- 90% Identity
- iTF_00824666; iTF_00824667;
- 80% Identity
- -