Emi040154.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000396.1:361633-364431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 1.1e-06 30.4 0.1 1 39 16 55 16 61 0.92 2 2 4.5 3.6e+03 -0.0 0.0 23 39 836 852 836 854 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGAACCTCTTCGCGGGCCacttcgtatactaaagaagcgctgcagttagccatacaaaaaataaacaataaagagctcacctatgcagccgcatcaaaattgtatggcatacctacatcaacacttagtgatagagtcctaaagaaaacagCTATAGTAAGTAATACCCTTGGCCGACCGACAACAATCCCAATGACATTAGAATCTAAActagcaaactgcctacgaatactggaaaagtgggggtgggggttatcaagagaagaggtactggatgtaacacaggattttataaaaagaaataaaatacaaagccccttcaaagatgacagaccgggagcagactggtttatttcttttcgccaacgacacaatttgtcaataaaaaagccgcaacctgtagaataccttcgaaaaaaaatgacagatccgtttattattaatgaatattttactcttctcgaaaagacacttcacgagttaaatgtttcggatcctaaacaaatctggaatctcgatgaaacttcagtttgtctcgatcccacaaaaactaaagttgtaggtgccagaggggagccttgtacacgaacaacgtgtggaagcgctaaagaaaatattacagtgttgactactgtaaatgcagccggacagaaattagaccccctgattgtattaaagggcaaacatatgtacgaacagtggatgttacaggatcctgaaaaatacgaattcaatcttgcgtatgcagccagcaaacgaggctggatggaaactaatattttttatgattacatgtcaaaagtaattatacctaatttgggtgaagacagacccgtattattactatatgacggacatgtcagccatgtcgatgacaaagtggtagctttagcagtagaaaacaatatcaccatattgaagtttcctgcacacacatcacatctattgcaaccgctagacttggctgtgttcaaatcatttaaaacaatttgggataaaaaccttgtaaaatggcaacgacagaatgttggaatcaaattaagaaaacgaagttttgctcaaatgtttgccaaagcgtggcaggaaaccaaaccagaggtcatacgaaatggtttcaaaaaaggtggcatttacccttttaaTCCTGCGGTTATACCAAAAGACAAATATGATCCAGCAGCTTATGCGCGATGGCAAAAACACATGGCTAAAATGACTTTTGAACAACCGAAAACTCTAACACTGATATGTGTAGATAAAATTAATAAGATCATGTCGAATATCAGCTCTACTTCTATCCCAAATAATAATATTGCTTACTCTGACATGTCGGACTCACCTACTTTAAAACATAGAGACAGCTCGCTACAACCACAGACGACTTTCGAACAATTGCTTCTAGAAAAAGTTTCGCAACATCCTGAAAACTCTAAGAATAATGTAGCTGTTAGGTTAAAACGAGTCGCGAAAGGTGCAGAAGTGATTACAAAATCTTTTCTAGAAAAGCAGCAAGAGATAGAATTAACAATGGAAAAAGAAATACAGAAGACAACAAAACGGAAACAAAAAACAGCACTTCAATCTAAAAATGATGCATTTGATTCTGTACCAGGACCATCTAAAATTCAAGATAAAAACTTAAAAACAAAAGAAACCGTAACGAATGTATCAGTATTGACTGAAAATAACAACACTGACGTGTATGTTTCTAAAAAAGGAAAGGGGATAGGTAAAAAAACTCGAACTGGCAAGGAAAATGATTTGAAAGTGGACAAGCATGCTAAACAAAAGGGGAAAAAAGCAATACATAAATTAGATAATAAATCTGATCAAAGAACGTCTACAAAGACAGCTCTGAAAAAGCGAAAAAGATCAAATAGCAGTGTTACGACAATTGAAAGTATTCAGATGAGCGTACATAGTGATTCTGACTTATTAGATTGTTTGAGTCATATATTATCTGACTGTGATATATGCACTGTATTTAATTATTATGACGGAAACAAGACTGACTTAGAATTAGCAGCTAGAGGACAACAAATTGAACAAATAGTTAAAGGAATACATGACGTTGATAATAATCAAGAGGGAAAAGCAAGCCAAAGGGACGACGAATTGTGTGAAGAAAAATGTGAGATAGAAGAAATTCTAGAAATTCGGACCAAAGATACAAACTTTCAGGTAAATGATAATAATAAAGTAACTATCTTATCGTCTGTAAAAATCACACCAGAGAACCAAGTTTTCTACAAAATTGTACCCGAAATATTACAACTAAAGCCAATTGATAAAGATACAGATCTATTTGCAAACCAAAAGCGAAAACTGTCACATAGTACAAGCGCATCTAATATACCAAAGAAAAAAACAAAGAAAGTTAATTGTCCTACAAAGACAATGACAAAAGAGCAAAAGGATTGCAGTGAAAACTTAAATATCAAAATTGATAAAGATGATGATATTAAAACAAAATATTATAGTGATGATGCGAAGCCATACAATATTGGGGATACAGTTCTAGTTAGATATTTCAAACGAACTTGGATATATTACGTCGGTGTCATTGAAAATAATACTATGAGTTCAAACCCAAATATGTATAACATAACATTCTTTAAAACGATTGGCAAGAAAAATAACCTGAAATTCGTTATTCCTAAGCGTAAAGATCAAGATTACGTACCTGATTCAAATATAGTTAAGGTGATAGAACTACTGCAGATAAATGAGGATCCCGTGGAGTACACACTTATGAATGACGATGATGAGAATTTCTTTTAA
- Protein Sequence
- MPRKYSRTSSRATSYTKEALQLAIQKINNKELTYAAASKLYGIPTSTLSDRVLKKTAIVSNTLGRPTTIPMTLESKLANCLRILEKWGWGLSREEVLDVTQDFIKRNKIQSPFKDDRPGADWFISFRQRHNLSIKKPQPVEYLRKKMTDPFIINEYFTLLEKTLHELNVSDPKQIWNLDETSVCLDPTKTKVVGARGEPCTRTTCGSAKENITVLTTVNAAGQKLDPLIVLKGKHMYEQWMLQDPEKYEFNLAYAASKRGWMETNIFYDYMSKVIIPNLGEDRPVLLLYDGHVSHVDDKVVALAVENNITILKFPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGIKLRKRSFAQMFAKAWQETKPEVIRNGFKKGGIYPFNPAVIPKDKYDPAAYARWQKHMAKMTFEQPKTLTLICVDKINKIMSNISSTSIPNNNIAYSDMSDSPTLKHRDSSLQPQTTFEQLLLEKVSQHPENSKNNVAVRLKRVAKGAEVITKSFLEKQQEIELTMEKEIQKTTKRKQKTALQSKNDAFDSVPGPSKIQDKNLKTKETVTNVSVLTENNNTDVYVSKKGKGIGKKTRTGKENDLKVDKHAKQKGKKAIHKLDNKSDQRTSTKTALKKRKRSNSSVTTIESIQMSVHSDSDLLDCLSHILSDCDICTVFNYYDGNKTDLELAARGQQIEQIVKGIHDVDNNQEGKASQRDDELCEEKCEIEEILEIRTKDTNFQVNDNNKVTILSSVKITPENQVFYKIVPEILQLKPIDKDTDLFANQKRKLSHSTSASNIPKKKTKKVNCPTKTMTKEQKDCSENLNIKIDKDDDIKTKYYSDDAKPYNIGDTVLVRYFKRTWIYYVGVIENNTMSSNPNMYNITFFKTIGKKNNLKFVIPKRKDQDYVPDSNIVKVIELLQINEDPVEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677519; iTF_00824660; iTF_00824666; iTF_00824667;
- 90% Identity
- iTF_00677519;
- 80% Identity
- -