Hmis025900.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- cheC
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000032.1:9816088-9817338[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-13 2.3e-10 40.8 0.0 3 43 8 48 6 49 0.92
Sequence Information
- Coding Sequence
- ATGCCTAATACATACAAAAGAAAGGCACTAAAGGCTGCTATAAATGctgtaaaaaatgataaattatcaGTGCGTGCGGCAGCCAAAGAGTTCGAAATTCCACGAAATACATTGGAAAGGAGAATAAAGAAGAATAATGATAGAAAGGGACCCATGGGACCATCTTCTTTATTTGGggaagaaaatgaaaaaaagttgGCTACTCATATCAAGTCTATGCAAGCCAAAGGTTTTCCACTGATAATAGATGATGTCAGAAAAATAGCTTACGACTTCGCAGAACAGTTAAagctaaaacataaatttaacaaagaaaCTGAGAAAGCGGGATATGACTGGTTGCAAATGTTTTTAAGAAGAAACACGGATATTAAATTGAGAAAGTCAGAAGGTGTCTCCTTGGCTAGAGCCAACGCTATGAATAGGTCGGAGGTAAAAGCATATTTCGATCTTCTAGAAAGTGTCCTCATCGAAGACGGTGAGATTTTACCACTAAATTGCGTCTTCAACATGAATGAGACAGGTCTACAAATAAACAGTCGTCCAGGACACGTGCTTGCTCAAAAAGGTTCCAAAATAGTTCACACAGTAACATCAACTGAAAAACGAGAGACGATCACTGTTATAGCTTGCTGCAATGCCGAAGGTATGTTTTTGCCACCGTCATGTATTATGAAGGGCAAAAATAAAAAGGACGAATTTGAAGATGGTTTGCCTCCAGGCTCAAAACTATTCATGGCACAAAAATCGGCGTATATAACTTCAGCAATATTCTTAGAATGGTTGAAAACTCACTTTGTTCCAAGAAAACCTGACGGAAAAGTTGTACTTTTACTTGACGGGCACTCAACTCACTGCAATTCCGTGGAAATGTTGGAGTTTGCTCATCagaataacattattttgatatcaatgCCGAGTCACACGTCTCATTATCTCCAGCCTTTAGATCGTTCggtatttaaatcattaaaaactcATTTCTATGAACAGTGTAGACTATGGATGAAACAAAACTCAGGACGTCGTATAACAAGACTTTCTTTCGGAGGTTTACTTAACAGAGCTTGGGGAAGAGCAGCATCGGCGGAAAATGCAATATCTGGCTTCAGAGCAACGGGAGTATATCCTTTTAATACAGAAGCAATCCCAGACTACGCTTATATTCAAGATCCCGTACACAAATTGCCGAGCCTATTTCACACTCAAAAAATTTTGCAGGGGAAGATGTATTTATTCCAAGTTCTTTAA
- Protein Sequence
- MPNTYKRKALKAAINAVKNDKLSVRAAAKEFEIPRNTLERRIKKNNDRKGPMGPSSLFGEENEKKLATHIKSMQAKGFPLIIDDVRKIAYDFAEQLKLKHKFNKETEKAGYDWLQMFLRRNTDIKLRKSEGVSLARANAMNRSEVKAYFDLLESVLIEDGEILPLNCVFNMNETGLQINSRPGHVLAQKGSKIVHTVTSTEKRETITVIACCNAEGMFLPPSCIMKGKNKKDEFEDGLPPGSKLFMAQKSAYITSAIFLEWLKTHFVPRKPDGKVVLLLDGHSTHCNSVEMLEFAHQNNIILISMPSHTSHYLQPLDRSVFKSLKTHFYEQCRLWMKQNSGRRITRLSFGGLLNRAWGRAASAENAISGFRATGVYPFNTEAIPDYAYIQDPVHKLPSLFHTQKILQGKMYLFQVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465973;
- 90% Identity
- -
- 80% Identity
- -