Dpar006777.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:69682358-69683848[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 2.8e-08 34.8 0.1 1 42 17 58 17 60 0.92
Sequence Information
- Coding Sequence
- ATGCCTAATAAATACAAGAGAAAGGCAGTAGCTCTGAGAGGCAATTGGTCTGAAGAAGCACTAAAAGCAGCCATTAGTGCTGTGAAAAATGACGGATTATCCGTGCGTGCGGCAGCTATTCAGTATAAAATACCGAGAAAAACATTAGAAAGAAGATTAAAGAAGGATAACGATAAGAAAGGGCCTATGGGACCATCTTCTTTAtttggagaagaaaatgagaagATTTTGGTTGCCCATATCAAATCGATGCAAGCCAATGGTTTTCCATTGACGATAGATGATGTCAGAAGGATAGCTTACAGTTTTGCAGagcagttaaaattaaaacatagaTTTAACGAAGAAACTCAGAAAGCAGGATATGACTGGTTGCAAATGTTCTTAAGCAGAAACACAGATATTACACTAAGAAAGTCGGAAGGTGTCTCCTTGGCTAGAGCCAATGCCATGAATAAATCAGAAGTAAATGCATATTTTCAACCGCTTGAATGCGTCCTTATGCAAGACAATGAGGTTTTAGCACCAAATTGCGTATTCAACATGGATGAGTCAGGTCTGCAGTTAAACAGTCGTCCAGGACATGTGCTTGCTCAAAAAGGCTCTAAAGCGGTTGCCACAGTAACATCAACTGAAAAAGGGGAGACAATAACCATTATAGCCTGCTACAATGCTGAAGGCACTTTTTTGCCACCTGCTTGTATCATGAAgggcaaaaataaaaaacccgAATTTGAAGATGGAATGCCTCCAGGATCAAAACTGTTCATGTCTCAAAAATCAGCATACATAACTTCAGAGATATTCTTAGAATGGTTAAAAACACACTTTGTTCCAAGAAAACCAGCCGGAAAAGTTGTTCTTCTGCTAGACGGCCACTCAAATCACTGTAATCCCGTAGAAATGTTGGAATACGCTAGTCAGAACGACATTGTTTTGATATCTATGCCGAGTCACACGTCTCATTATCTCCAGCCCTTGGATCGTTCTGtatttaaatcattaaaaacTCACTTCTATGAACAGTGTAGACTTTGGCTAAAACAAAGCCCAGGACGTCGTATAACGAGACTTTCTTTCGGAACTTTGCTTAACAAGGCTTGGGGAAAAGCAGCGTCGGCGGAAAATGCAATTTCTGGCTTTAAAGCAACGGGAGTGTATCCTTTCAATCCAGAAACGGTGCCAGACTACGCGTTTATTCAAGAATCCGTAGTGGATAATGATGACGCGTCTATTCCAAGCTGTTCTAATGAGCCAAGAAGAGATACAAATTATACCCCTGAAATCGTTCCCAAAAAATCGAAAACCTCATTGATCACTGCCACTGTGTCTAATGTTTTAGAGCCAAGCACTGCGAAAAAACTTCCATCCAATAACGTTCCAGATTACACCCCTCGCAGATTTTACGGGAAATATCTCCTATTCCACAAAAACTAA
- Protein Sequence
- MPNKYKRKAVALRGNWSEEALKAAISAVKNDGLSVRAAAIQYKIPRKTLERRLKKDNDKKGPMGPSSLFGEENEKILVAHIKSMQANGFPLTIDDVRRIAYSFAEQLKLKHRFNEETQKAGYDWLQMFLSRNTDITLRKSEGVSLARANAMNKSEVNAYFQPLECVLMQDNEVLAPNCVFNMDESGLQLNSRPGHVLAQKGSKAVATVTSTEKGETITIIACYNAEGTFLPPACIMKGKNKKPEFEDGMPPGSKLFMSQKSAYITSEIFLEWLKTHFVPRKPAGKVVLLLDGHSNHCNPVEMLEYASQNDIVLISMPSHTSHYLQPLDRSVFKSLKTHFYEQCRLWLKQSPGRRITRLSFGTLLNKAWGKAASAENAISGFKATGVYPFNPETVPDYAFIQESVVDNDDASIPSCSNEPRRDTNYTPEIVPKKSKTSLITATVSNVLEPSTAKKLPSNNVPDYTPRRFYGKYLLFHKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465980; iTF_00717699; iTF_00465968; iTF_00824642; iTF_01436964; iTF_01197657; iTF_00889119;
- 90% Identity
- iTF_00465968;
- 80% Identity
- -