Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01000977.1:68242-82515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.37 23 5.8 5.9 3 23 38 59 36 59 0.91

2 15 5 3.1e+02 2.2 1.9 1 19 68 86 68 91 0.90

3 15 1.1e-05 0.00066 20.0 2.4 1 23 97 120 97 120 0.97

4 15 0.00027 0.017 15.6 3.3 1 23 122 144 122 144 0.98

5 15 0.0083 0.52 10.9 0.1 1 23 180 202 180 202 0.98

6 15 0.53 33 5.3 0.7 3 23 230 251 229 251 0.89

7 15 0.19 12 6.6 5.6 1 19 258 276 258 280 0.86

8 15 0.00069 0.043 14.3 0.1 1 23 286 309 286 309 0.92

9 15 0.0028 0.17 12.4 0.2 1 23 319 342 319 342 0.97

10 15 1.3e-05 0.00082 19.8 0.1 1 23 347 371 347 371 0.98

11 15 0.079 4.9 7.9 1.2 3 23 379 399 378 399 0.97

12 15 0.0026 0.16 12.5 0.1 1 20 404 423 404 426 0.93

13 15 0.00046 0.029 14.9 3.1 1 23 432 454 432 454 0.97

14 15 7.5e-06 0.00047 20.5 0.8 1 23 460 482 460 482 0.96

15 15 0.23 14 6.4 4.3 1 23 488 511 488 511 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.37	23	5.8	5.9	3	23	38	59	36	59	0.91
2	15	5	3.1e+02	2.2	1.9	1	19	68	86	68	91	0.90
3	15	1.1e-05	0.00066	20.0	2.4	1	23	97	120	97	120	0.97
4	15	0.00027	0.017	15.6	3.3	1	23	122	144	122	144	0.98
5	15	0.0083	0.52	10.9	0.1	1	23	180	202	180	202	0.98
6	15	0.53	33	5.3	0.7	3	23	230	251	229	251	0.89
7	15	0.19	12	6.6	5.6	1	19	258	276	258	280	0.86
8	15	0.00069	0.043	14.3	0.1	1	23	286	309	286	309	0.92
9	15	0.0028	0.17	12.4	0.2	1	23	319	342	319	342	0.97
10	15	1.3e-05	0.00082	19.8	0.1	1	23	347	371	347	371	0.98
11	15	0.079	4.9	7.9	1.2	3	23	379	399	378	399	0.97
12	15	0.0026	0.16	12.5	0.1	1	20	404	423	404	426	0.93
13	15	0.00046	0.029	14.9	3.1	1	23	432	454	432	454	0.97
14	15	7.5e-06	0.00047	20.5	0.8	1	23	460	482	460	482	0.96
15	15	0.23	14	6.4	4.3	1	23	488	511	488	511	0.95

Sequence Information

Coding Sequence: ATGGAGTCACCCATTCAGCTTGAGGAGAGCGGGGAGTGGTTGGTGGAGCTGGAACAGCTGATCGCCGGATGTCCCAAGCCGACTGCGATCGACATAATCGGAGGCATTTTCTGCAATTTATGTCATTCAACATTTTGCAACAAGAAAGAGTTTGATCGTCACTACACTGAGCAGCATAACAGGATTCCTTCAGCCATAGTTTACACTTGCGTAGTATGCCACAAGGAGATAGCCCCATATCCCAATTTTCGGAACCACTGCTATCTGGCACATGTTGCTAAAGATAGGTTCAAGTGTGAACTATGCCACAGGTCATTTTCAAAACAATCCGTTCTGACCAGTCACATAAATTCTGTACACCTGTTCAGATGTGCCTCATGTCAAAAagaatgTTCATCTAAAAGTGAACTACAGACACACCAAAATCTTCATAAACGAGATAAAGAGAAGCCTCCATACTCTTGCCACCAATGCTCCAGTACTATAGAGACTGTTGACATGTGCGAGATGCACCTAGATGAACACTGCAAGATAATGTATCCGTGTCCAATCTGCAATGAGATAACCAACAGCAAACTTGATACTGCTAGACATCTTACAACCCATTTCGACGAGGCACTTACTGGCGAAATTGTTAGTACTGAACTCAGTGCCGACTGCTCTGTTGAAATGCTCGGAGGGATCCTCTGCTCATACTGCGAAGAACTATTCAAAAATAGAACGGATTTCGATTATCACTTCATCAATGAACATTCAgacaaagatatattttactctTGCAACATTTGTGGAAAACAGTACCGAAAATACCATTTATTCGCCGACCACTGCTATTTTCACGTCGCCAAAAACAGATTCGAATGTGTAGACTGTGGCAAACTATTTCCTCGCCTGTCGCTCCTCGTGCTCCACACGGAAGCGTTCCACACGCCGGGCTCGGCAGACAACAAGCCATTCAGCTGCGCCCAGTGCGGACACGCCTTCGGCTCTGTGGGCAGGCTCCGCGAACATCTGCGGGTCGTACACACTGTCAACGCTTTCACCTGCCCTGAAGATGGATGCGACATCAAATTCGATACACCTAGAGATCTGATCCTCCACCAACGCACCCATAAAACATCCTGTGACAAGTGGTGTCGACAATGTGGCCTGCAGTTCACCACGCTTTCGTCCTGCCAGGCGCACCTTGACGTCCATCGCATGAAGCATTACGCCTGCCCCGTTTGTAACAAGGAGTACCGAGAGAAGTACCTCATAACTAAGCACATTCCAATACATTTCGAATCAGTGCTACATGTGTGTAAGGTCTGCGGAAAAGTGTTTAACGCTCGTCATCGCCTCGTCGAGCACACAAAAACACACTCCGAAGTTAGACGCCACATATGCAGCTATTGCGGCAAAGGATTCATGAAACCGTATCAACTTGAACAGCATCTGAACATCCACACAGGTTCGAGACCCCACAAATGCATCATCTGCTCCAAAACTTTCGCAAGCTATCCAAACTGTATGAAGCATCTCCGGAAAGTACATAACATTGAAAGAAACAAACTGAAAACACTCGCCGAGAACACTAAAAAAGCTAGTAAAGACGTTGCTATATCCAAAAATAGAAAGGATTTTGGTAGTAGTTTCAGTGAAATTAAAAGCGAATCGGGCATGGAATCTACGAGTCCCGAGATATCACTGGACACGTACATATTTGCCGAGTCCGACGACAGCACCATGGACAGCATTGATCCCATGATAATCAAGAAGGATTGGTGTATTTTGAACGAAAATTCATTAATCGACAGTAGTTTGCAATATATCGATATGCTGCCGGTGAGCCATACCACATTTGAAACcgaaataaaagCAACCCCGCTGGAGTGGTCGGCAGCGAGCGAGGGTGCGGAGCTGCGCGAGTACGGGCCCGAGTTCAGCGCGCACGTCGACGACCTGGACCTGCCGCACATCGACCCGCGCCTCGCCACCAACCCGCAGCCCGCGCTCGCGCCGCCCGCCGCTCCCTCGGAGGCGCTCTTCGCCAAGCTGTACCAAGCGTACGAGCCGAACGACGCCAACAGACTCCCCATTATAAACACAGATATATTCTAA
Protein Sequence: MESPIQLEESGEWLVELEQLIAGCPKPTAIDIIGGIFCNLCHSTFCNKKEFDRHYTEQHNRIPSAIVYTCVVCHKEIAPYPNFRNHCYLAHVAKDRFKCELCHRSFSKQSVLTSHINSVHLFRCASCQKECSSKSELQTHQNLHKRDKEKPPYSCHQCSSTIETVDMCEMHLDEHCKIMYPCPICNEITNSKLDTARHLTTHFDEALTGEIVSTELSADCSVEMLGGILCSYCEELFKNRTDFDYHFINEHSDKDIFYSCNICGKQYRKYHLFADHCYFHVAKNRFECVDCGKLFPRLSLLVLHTEAFHTPGSADNKPFSCAQCGHAFGSVGRLREHLRVVHTVNAFTCPEDGCDIKFDTPRDLILHQRTHKTSCDKWCRQCGLQFTTLSSCQAHLDVHRMKHYACPVCNKEYREKYLITKHIPIHFESVLHVCKVCGKVFNARHRLVEHTKTHSEVRRHICSYCGKGFMKPYQLEQHLNIHTGSRPHKCIICSKTFASYPNCMKHLRKVHNIERNKLKTLAENTKKASKDVAISKNRKDFGSSFSEIKSESGMESTSPEISLDTYIFAESDDSTMDSIDPMIIKKDWCILNENSLIDSSLQYIDMLPVSHTTFETEIKATPLEWSAASEGAELREYGPEFSAHVDDLDLPHIDPRLATNPQPALAPPAAPSEALFAKLYQAYEPNDANRLPIINTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441837;
90% Identity: iTF_00823340;
80% Identity: -