Dmen028219.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421323.1:3307010-3316508[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.47 63 5.7 5.9 3 23 38 59 36 59 0.91 2 15 6.4 8.7e+02 2.2 1.9 1 19 68 86 68 91 0.90 3 15 0.00013 0.017 17.0 2.5 1 23 97 120 97 120 0.97 4 15 0.00035 0.047 15.6 3.3 1 23 122 144 122 144 0.98 5 15 0.011 1.4 10.9 0.1 1 23 180 202 180 202 0.98 6 15 0.13 17 7.5 1.9 3 23 230 251 229 251 0.92 7 15 0.31 41 6.3 3.7 1 17 258 274 258 277 0.76 8 15 0.00088 0.12 14.3 0.1 1 23 286 309 286 309 0.92 9 15 0.0045 0.6 12.1 0.2 1 23 319 342 319 342 0.97 10 15 1.4e-05 0.0019 20.0 0.1 1 23 347 371 347 371 0.98 11 15 0.063 8.5 8.5 1.4 3 23 379 399 379 399 0.97 12 15 0.0033 0.44 12.5 0.1 1 20 404 423 404 426 0.93 13 15 0.00058 0.079 14.9 3.1 1 23 432 454 432 454 0.97 14 15 9.6e-06 0.0013 20.5 0.8 1 23 460 482 460 482 0.96 15 15 0.29 39 6.4 4.3 1 23 488 511 488 511 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCGCCCATTCAGCTTGAAGAGAGCGGGGAGTGGTTGGTGGAGCTGGAACAGCTGATCGCCGGCTGCCCCAAGCCGACTGCGATCGACATAATCGGTGGCATTTTTTGCAATTTATGTCATTCAACATTTTGCAACAAGAAAGAGTTTGACCGTCACTACACTGAGCAGCATAACAGGATTCCTTCAGCCATAGTTTACACTTGCGTAGTATGTCACAAAGAGATAGCCCCATACCCTAATTTTCGCAACCACTGCTATCTGGCACATGTCGCTAAAGACAGGTTCAAGTGTGAACTATGCCACAGGTCATTTTCAAAACAATCCATACTGACCAGTCATATTAATTCTGTACACCTCTTCAGGTGTGCCTCATGTCAAAAAGAatGTTCATCTAAAAGTGAACTACAGACACACCAAAATCTTCATAAACGAGATAAAGAAAAGCCTCCATACTCTTGCCATCAATGCTCCAGTACTATAGAGACTGTGGACATGTGCGAGATGCACCTAGATGAACACTGCAAGATAATGTATCCGTGTCCAATCTGCAATGAGATAACCAACAGCAAGCTTGATACCGCTAGACATCTTACAACCCATTTTGATGAGGCACTTACTGGCGAAATTGTTAGCACTGAACTCAGTACCGACTGCTCTGTTGACATGCTCGGAGGGATCCTCTGCTCATACTGCGATGAACTATTCAAAAATAGAACAGATTTCGATCATCATTTTATCAATGAACATTCAgacaaagatatattttacaattGCAACATTTGTGGGAAACAGTACCAAAAATACCATTTATTCGCCAACCACTGCTATTTTCACGTCGCCAAAAATAGATTCGAATGTGTAGACTGTGGCAAGCTATTTCCTCGCCTGTCGCTCCTCGTGCTCCACACGGAAGCGTTCCACACGCCGGGCTCTCCAGACAACAAGCCGTTCAGCTGCGTCCAGTGCGGACACGCGTTTGGCTCTGTGGGTAGACTCCGCGAACATCTGCGGGTCGTCCACACTGTCAACGCCTTCACCTGCCCTGAAGATGGATGCGACATGAAATTCGATACACCTAGAGATCTGATCCTCCACCAACGCACCCATAAAACATCTCGTGACAAGTGGTGTCAACAATGCGGCCTGCAGTTCACTACACTATCGTCCTGCCAGGCACACCTTGACGTTCATCGCATGAAGCATTACGCCTGCCCAGTTTGCAACAAGGAGTACCGAGAGAAGTACCTCATAACTAAGCACATCCCGATACATTTCGAGTCAGTGCTCCATGTGTGTAAGGTCTGCGGAAAAGTGTTCAACGCTCGCCACCGCCTCGTCGAGCACACAAAAACACACTCCGAAGTTAGACGCCACATATGCAGCTATTGCGGCAAAGGATTCATGAAACCGTATCAACTTGAACAGCATCTCAACATCCACACAGGTTCGAGACCCCACAAATGCATCATCTGCTCCAAAACTTTCGCAAGCTATCCAAACTGCATGAAGCATCTCCGGAAAGTACATAACATTGAAAGAAACAAACTGAAAACACTCGCCGAGGACACTAAAAAAGCTACTAAAGACGTTGCTTCCGCCAAAAATAGAAAGGATTTTGATAGAAGTTTCAGTGAAATTAAAAGCGAATCGGGCATAGAATCCACAAGTCCTGAGATATCACTGGACACGTACATATTCGCCGAGTCCGACGACAGCACCATGGACAGCATTGATCCCATGATAATCAAGAAGGATTGGTGTATTTTGAACGAAAATTCATTAATCGACACtaatttacattatattgaTATGCTGCCAGTTACCCATACCACATTTGAAACTGAAATAATAGCAACCCCGCTGGAGTGGTCGGGGTCAACTGAGGGCGCGGTCCTGCGCGAGTACGGGCCCGAGTTCAGCGCGCACCTCGACGACCTGGACCTGCCGCACATCGACCCGCGCCTCGCCACCAACCCGCAGCCCGCCCTCGCCCCGCTCGCCCCCCTCAGCCCCCTCGCCACCCTCGCCCCACTCGCCCCGCCCTCGGAGACGCTCCTCACCAAGCTGTACCAGGCGTACGAACCGGACGACGCCAACAGACTCCCCATTATAAATACAGATATATTCTAA
- Protein Sequence
- MESPIQLEESGEWLVELEQLIAGCPKPTAIDIIGGIFCNLCHSTFCNKKEFDRHYTEQHNRIPSAIVYTCVVCHKEIAPYPNFRNHCYLAHVAKDRFKCELCHRSFSKQSILTSHINSVHLFRCASCQKECSSKSELQTHQNLHKRDKEKPPYSCHQCSSTIETVDMCEMHLDEHCKIMYPCPICNEITNSKLDTARHLTTHFDEALTGEIVSTELSTDCSVDMLGGILCSYCDELFKNRTDFDHHFINEHSDKDIFYNCNICGKQYQKYHLFANHCYFHVAKNRFECVDCGKLFPRLSLLVLHTEAFHTPGSPDNKPFSCVQCGHAFGSVGRLREHLRVVHTVNAFTCPEDGCDMKFDTPRDLILHQRTHKTSRDKWCQQCGLQFTTLSSCQAHLDVHRMKHYACPVCNKEYREKYLITKHIPIHFESVLHVCKVCGKVFNARHRLVEHTKTHSEVRRHICSYCGKGFMKPYQLEQHLNIHTGSRPHKCIICSKTFASYPNCMKHLRKVHNIERNKLKTLAEDTKKATKDVASAKNRKDFDRSFSEIKSESGIESTSPEISLDTYIFAESDDSTMDSIDPMIIKKDWCILNENSLIDTNLHYIDMLPVTHTTFETEIIATPLEWSGSTEGAVLREYGPEFSAHLDDLDLPHIDPRLATNPQPALAPLAPLSPLATLAPLAPPSETLLTKLYQAYEPDDANRLPIINTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823340; iTF_01198073; iTF_00824125; iTF_00157471; iTF_00707223;
- 90% Identity
- iTF_00823340;
- 80% Identity
- -