Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01000297.1:1087611-1094978[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.8e-07 3.6e-05 24.0 0.6 1 23 206 228 206 228 0.98

2 14 0.071 4.5 8.0 4.1 1 23 234 257 234 257 0.96

3 14 3.6e-06 0.00022 21.5 0.8 1 23 263 285 263 285 0.98

4 14 2e-06 0.00012 22.4 3.1 1 23 290 312 290 312 0.99

5 14 1.2e-05 0.00072 19.9 2.6 1 23 318 340 318 340 0.98

6 14 6.7e-07 4.1e-05 23.8 1.1 1 23 346 369 346 369 0.95

7 14 2.9e-05 0.0018 18.7 2.9 1 23 375 397 375 397 0.97

8 14 9.4e-06 0.00058 20.2 1.1 1 23 403 425 403 425 0.98

9 14 4e-05 0.0025 18.2 2.1 1 23 431 453 431 453 0.99

10 14 6.9e-08 4.3e-06 26.9 0.7 1 23 459 481 459 481 0.98

11 14 1.7e-06 0.00011 22.6 3.5 1 23 487 509 487 509 0.98

12 14 0.058 3.6 8.3 2.9 1 23 515 534 515 534 0.95

13 14 1.2e-06 7.4e-05 23.0 0.8 1 23 540 562 540 562 0.98

14 14 0.00056 0.035 14.6 3.5 1 23 568 590 568 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.8e-07	3.6e-05	24.0	0.6	1	23	206	228	206	228	0.98
2	14	0.071	4.5	8.0	4.1	1	23	234	257	234	257	0.96
3	14	3.6e-06	0.00022	21.5	0.8	1	23	263	285	263	285	0.98
4	14	2e-06	0.00012	22.4	3.1	1	23	290	312	290	312	0.99
5	14	1.2e-05	0.00072	19.9	2.6	1	23	318	340	318	340	0.98
6	14	6.7e-07	4.1e-05	23.8	1.1	1	23	346	369	346	369	0.95
7	14	2.9e-05	0.0018	18.7	2.9	1	23	375	397	375	397	0.97
8	14	9.4e-06	0.00058	20.2	1.1	1	23	403	425	403	425	0.98
9	14	4e-05	0.0025	18.2	2.1	1	23	431	453	431	453	0.99
10	14	6.9e-08	4.3e-06	26.9	0.7	1	23	459	481	459	481	0.98
11	14	1.7e-06	0.00011	22.6	3.5	1	23	487	509	487	509	0.98
12	14	0.058	3.6	8.3	2.9	1	23	515	534	515	534	0.95
13	14	1.2e-06	7.4e-05	23.0	0.8	1	23	540	562	540	562	0.98
14	14	0.00056	0.035	14.6	3.5	1	23	568	590	568	590	0.98

Sequence Information

Coding Sequence: atgaaatattctACTGAAATGTCTTATAAGTTTGATATAAACAGCTTGTGCCGGTGCTGTCATGCCCAAGGGAATTTTAAGAGCGATAATGGTTGGACGCCTGAAAATATTCAAGATGATTATTGTTTATGGCTAAAAGATACATTTGATATTAATATCTCACCGGTACCCCAAGACATTGGTGTAACATACAGTATATGTGAAATATGTGAGCCGAGACTCAGAGATGCTGCATCGTTTAAAAAACAAGTGTTGTCTTGTGAGGACAAGTTGAGACAGTATTTGTACAACAACTGCCAACTAAAAGATGCAGCAGTTTTGGAGAAAGAAGTTAAAAAGGAAATAGGACAGGATGgatttaaaatagaaacacaAACTAATTCCGAAGAAAAGTTGGATATAAAATGTAGCGATATCAAAGTTCAAAATTTCGACCAGTTTCTGCAAGCTGAGGACGATGACCAGCCTCTGTCTGCATTTCGCAGCTCTAAGGTTTTGGAGTATGAACAGCCGGAGATACACGATGAGACTGCTGGAGAAGATGTTGATTGGAGAATACCAGATTTAAGTGATGACGAAGAACTCAAAGAAAAAAAGCcaaagaaatcaaaaaaatattcctgCGACGTTTGCCAAAAGAAATTCTCTTACAACGGATCTTTGGAAGTCCACATGAAGGTCCACAGTGGTGAAAAATCTTTTACGTGTCATCTATGCAACTCAACACACACAGACAACAAAGAATTGACTAAACATATAACGATAATGCACATAGTCGACAACCAATATCCATGTAACCAATGCGAAAAGATCTTCGAAAAAGCTAGACTGCTCAAGAAACACATAAAAACGCATTACAGCGAAAAATTCAAGTGCACAGAATGTCAAAAAGAATTCCAGAGGAAGAAGGGATTAAAAGAACATATGAAAACGCACACTGGAGAAAGAAAGTACGCGTGCgatgtatgtaataaatcatTTGGACATAACCAGACGTTGAAATCCCATATGTTCACACACACTGGAGAACGACCATACGTTTGTGATGTCTGCGGCAGAAGATTCCCCCAAAGAACTCATCTCAAAAGACACATATTTATAATCCACGCTGGAATAAAACCCCACAGTTGTAACGTATGCAAGAAACAATTCTCCAGCAAAAGTTATCTAGCAATACATGAAAGACAACATACCGGGGAAAGACCGTATTCTTGCGAAGTGTGCAAGAAAAATTTCACTGCTTACACGACTTTGAAAGTCCATATGCGGGTACACACAGGTTTCAAGCCATACACTTGCAGTTTTTGCGATAGACAATTCGCCCAAATGgctagttttaaattacatcaGAGAACACATACGGGCGAAAGACCGTTTTCTTGCAAGATTTGCAAGAAACCTTTCTCGGATAATGGGTATTTGAAGATTCATATGCGAGTACATTCTGGGGAAAAACCGTTTTCTTGTGAGATTTGCAAGAGATGTTTCAGGGAGACCGGTCAGTTGAAAAGGCACATGCGTGTACACACTGGTGTAAAACCGTATACGTGTAAAATCTGTAATAAGCAGATAGGCAATTTGTCGAAACATATGAGAGTGCATTCTGAACAGAGGCCTTTTAGCTGCACTGTTTGCAATAAACAGTTTTCTATAAAtggtaatttgaaattgcatATGAGGGTACACACCGGCGAAAGACCGTTTAGTTGCGACTTGTGTAGCAGCCAGTTTACCCAAAGTAGTGGTTTGAAGAGACATCGGTGTGTTCATGGTGGCAAAAGTGATAGTTGA
Protein Sequence: MKYSTEMSYKFDINSLCRCCHAQGNFKSDNGWTPENIQDDYCLWLKDTFDINISPVPQDIGVTYSICEICEPRLRDAASFKKQVLSCEDKLRQYLYNNCQLKDAAVLEKEVKKEIGQDGFKIETQTNSEEKLDIKCSDIKVQNFDQFLQAEDDDQPLSAFRSSKVLEYEQPEIHDETAGEDVDWRIPDLSDDEELKEKKPKKSKKYSCDVCQKKFSYNGSLEVHMKVHSGEKSFTCHLCNSTHTDNKELTKHITIMHIVDNQYPCNQCEKIFEKARLLKKHIKTHYSEKFKCTECQKEFQRKKGLKEHMKTHTGERKYACDVCNKSFGHNQTLKSHMFTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHAGIKPHSCNVCKKQFSSKSYLAIHERQHTGERPYSCEVCKKNFTAYTTLKVHMRVHTGFKPYTCSFCDRQFAQMASFKLHQRTHTGERPFSCKICKKPFSDNGYLKIHMRVHSGEKPFSCEICKRCFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSEQRPFSCTVCNKQFSINGNLKLHMRVHTGERPFSCDLCSSQFTQSSGLKRHRCVHGGKSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441763;
90% Identity: iTF_00707185;
80% Identity: -