Hscr023417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Hypercompe scribonia
Gene Symbol
Zfy1_1
Assembly
GCA_949316085.1
Location
OX438985.1:722148-727982[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.76 81 5.0 0.8 2 23 244 265 243 265 0.94
2 16 0.5 53 5.6 0.2 6 23 277 294 277 295 0.95
3 16 0.0074 0.79 11.3 0.0 2 23 306 328 305 328 0.94
4 16 6.6e-06 0.0007 20.9 0.8 2 23 351 372 351 372 0.97
5 16 1.3 1.4e+02 4.3 4.6 1 23 488 510 488 510 0.97
6 16 0.00023 0.024 16.1 2.0 2 23 517 539 516 539 0.92
7 16 5.8e-07 6.2e-05 24.3 0.8 1 23 545 567 545 567 0.99
8 16 1.3e-06 0.00014 23.2 4.4 1 23 573 595 573 595 0.98
9 16 0.00035 0.037 15.5 1.1 1 23 601 623 601 623 0.98
10 16 0.00024 0.026 16.0 3.2 1 23 629 651 629 651 0.95
11 16 0.43 45 5.8 1.0 2 23 700 720 700 720 0.94
12 16 2.7e-05 0.0028 19.0 0.1 1 23 726 749 726 749 0.96
13 16 3.3e-05 0.0035 18.7 1.1 1 23 755 777 755 777 0.99
14 16 0.0002 0.021 16.3 0.2 1 23 783 805 783 805 0.98
15 16 0.011 1.1 10.8 0.1 1 23 810 832 810 832 0.92
16 16 0.00074 0.079 14.5 1.2 6 23 842 859 840 859 0.97

Sequence Information

Coding Sequence
atgaataacgGCACTGaacaagtatatttattaaattctataCAAAATCATCCACTAGGTTTATCACAAAAGCAAGTGACGACACACGGAACCTCAGCAGTCAATCTTGAAAatgTGGACAATTTCTCAAATGTGTGTCGGACATGTGCCACCATCACACAACTTGTCATCCCCATATTTACTGGGGAGGGACTTGAGCATCACTTGGCtgaaaaaatacacaaacattTGCCTATTACGGTTTCCGAGACAGACCTTCTGCCTTTAGTGGTGTGCTATCAGTGTGTCAGCACACTACTCGCTTGGCATGAGCTGGTGGAGTGCTGTTTGCAGGCTGACCGAGCTCTCAAAGCTAAGATTGGCGTGGATTCCAGTACTGAAACTCAAAAGATAACCCTTGCACCGAGTATCTCCACAGAAGAGGATTCACAAAGCAAGTCACATTACGGAACGGTGAGAAACGTTCTGGTCAAATACTTCCATCAGTTATCGCTGGAAGATAATTTAGACATGGAGTTTGTCTGCCAGATGTGTGTAGAAAAACCTGCCTTAACAACTGTGGCAAGCCTAGCGGACCATTTGAAATACGATCACAGTTCACACAGTATAGATGAGGCAaccataaaaatgtttatcaaaAACCATGTTACATTTGAAGAAGTGTTAGTGTTTGACGATTACGATACACCGGAAAACACAGAAATAATTGAGAAAGCTTTGCCCAATATATATTGCCCTTATTGCGCAAGTGTCTTTTCGTCAGCAACGCGTCTAGTGTGCCATCTGAATAAGCATTTCCAAGTGACTATCGAAGATGGTGTCACTTGCTGCGGAATAGTGTACAACGAAAAGAAAAACTTCGTGATACATCTACAGGAACATCATGTCGAAAGAAAGAAAGCTAGTCTGGAGAAAGTGTGCAAAAGTTGTGGTCTAGAAGCCAAAAACGCGAGTGAACTCCAAGCTCATATAAACGATGCACATCAAAAGAAGGAAGTGTGTAAAACAAAGACACTCCAGAGTCCAAAAAACCAGAAATATATCCCAGCAGTTTGTCCGGAATGCAATAAAACGTTTGCCAATAAATACAGCATGTTTCTACATATGAAGAACCACAACGCCGAAGTACGTACGGACGACTCTCAGTTCCTGGATGCGTCAGAAAATTCAGACCTATCGGACGATAAGCCACTTTCTACATTAACTTCTAAAAACCCTGAGGATTTGTACAACGAGTTTTATAGAGCGCTCGTTAACTTTAGAAATCATTTTGTCGGAGAACATAACCATCGAGAGTCTTACCCCGATTTCACCGACTCCTCCAGTGCATCAGAAGTTGAAGAAAATAGTATAGACAGTTACGACGACCTCACCCAGTGTAACATGAGAAAAGATATAATGGATAAGGAGACCAGACTGGAACTCGATCAGGTACAAACTAAGGTTAATGGAAAAGTATTCTATACGTGTAGAATCTGCAGCAAGAACTTAAGCTCTTCACACACGTACATGTTTCATAAAAGAATACATACCGGCGAAAGGCCCTGCGTGTGCCACATTTGCGGCAAACAATTTCGAGCTCCGAACGGATTGCAACGACATCTGACAGAGACACACGAACGCCTACGAAGATACACCTGCAGTTTATGTCCCAAAAACTTCGCCAACTCGCAGAATCTGAAGCAACATTTGAGGATACACACCGGCGAGAGACCGTTCGTGTGCTCGCACTGCGGCAAAAGATTCACCCAGAGCGGTTCTCTGCACGTGCATTTAAAAACGCACAGCGAACAGTTTCCGTATCACTGCGCCGAGTGCGGGGCGAAATTCCGGCTGCGATCCGGTTTAGCGAGGCACAGGCTCAAGCACACGGGCGAGAGACCGCACGCGTGCTCCCTATGCGGGAAAGGATTTCGACAACGACACGAACTGAACTCTCACAGTCTGTCCCACTCGGACGCCAAGCCCTTCTCGTGCACCCTCTGCGGGGCGGCGGCGCTCGCGGAGGTCGAGATCGAGGAGCGCGACCGCGACGCCGCCCCGGCGACGGAAAACGATAGACCGGCGACCGTCGCCCCCGTCTCGCGGAAGACCGCGCGGTGCGAGAAGTGCAACAAAAGCGTATCGGCCGTGTCGCGGCGGAGACACGAGCGGCTGCACGACGGCGAGAAGAGGTACAGCTGccacacgtgcggccgcgcctTCGCCGACGGCGGCAACCTCGCGCGCCACGCCCGCGCGCTGCACGCGCGGCTGCGGCCCTACCGGTGCGCGACGTGCGCGAAGGCGTTCTCGCGGCGCGCGCACCTGGAGGACCACGAGCGCTCGCACGGCGAGCGGCGCGAGTTCGTGTGCGAGGGCTGCGGCGCGGCGTGCAAGTCGCGCGCGGCGCTGCGCATGCACGCGCGCTCGCACGCGCCGCGCGCGCACCGCTGCGTGCCGTGCGGCGCCGCCTTCCGCCGCGCCGCCGAGCTGCGCGCGCACGGCTCCGTGCACTCGGGCGAGCGCGCGCACGCCTGCCGCTGCGGCCGCGCCTTCCGCCTGCGCGCGCAGCTCGCGCGCCACCAGCGCACGCACTGCGCCGACACGCTACCGATCAATACACCCACCTAA
Protein Sequence
MNNGTEQVYLLNSIQNHPLGLSQKQVTTHGTSAVNLENVDNFSNVCRTCATITQLVIPIFTGEGLEHHLAEKIHKHLPITVSETDLLPLVVCYQCVSTLLAWHELVECCLQADRALKAKIGVDSSTETQKITLAPSISTEEDSQSKSHYGTVRNVLVKYFHQLSLEDNLDMEFVCQMCVEKPALTTVASLADHLKYDHSSHSIDEATIKMFIKNHVTFEEVLVFDDYDTPENTEIIEKALPNIYCPYCASVFSSATRLVCHLNKHFQVTIEDGVTCCGIVYNEKKNFVIHLQEHHVERKKASLEKVCKSCGLEAKNASELQAHINDAHQKKEVCKTKTLQSPKNQKYIPAVCPECNKTFANKYSMFLHMKNHNAEVRTDDSQFLDASENSDLSDDKPLSTLTSKNPEDLYNEFYRALVNFRNHFVGEHNHRESYPDFTDSSSASEVEENSIDSYDDLTQCNMRKDIMDKETRLELDQVQTKVNGKVFYTCRICSKNLSSSHTYMFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERLRRYTCSLCPKNFANSQNLKQHLRIHTGERPFVCSHCGKRFTQSGSLHVHLKTHSEQFPYHCAECGAKFRLRSGLARHRLKHTGERPHACSLCGKGFRQRHELNSHSLSHSDAKPFSCTLCGAAALAEVEIEERDRDAAPATENDRPATVAPVSRKTARCEKCNKSVSAVSRRRHERLHDGEKRYSCHTCGRAFADGGNLARHARALHARLRPYRCATCAKAFSRRAHLEDHERSHGERREFVCEGCGAACKSRAALRMHARSHAPRAHRCVPCGAAFRRAAELRAHGSVHSGERAHACRCGRAFRLRAQLARHQRTHCADTLPINTPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441772;
90% Identity
-
80% Identity
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