Hscr004283.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypercompe scribonia
Gene Symbol
Hr39
Assembly
GCA_949316085.1
Location
OX438969.1:20996760-21008961[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.27 3.4e+03 -1.8 0.4 87 174 95 192 37 214 0.48
2 4 3 3.8e+04 -6.1 7.5 98 162 217 282 141 305 0.54
3 4 4.4e-08 0.00056 20.5 0.1 1 20 414 433 414 440 0.91
4 4 4.8e-65 6e-61 208.1 0.0 150 408 465 732 440 732 0.85

Sequence Information

Coding Sequence
ATGCCGAACGGAAGGGGTCAATTCTCATACAGTTCAAGCGGGGTCCGTATCAGTGTATCTTCAGAGCCTCATGATGAAGACTCTACTGACGCCGAGATCTCCAAAATCGACTTCTCACAACATCAATACGAGGTTAACATGCGTAATAAAAAGAAACGATCAGCGAGTGGGACGCACTGCGAACTACCGAACAATGAACGCGAGCGTCCCATGTCTTGGGAGGGTGAACTTTCAGATTCCGAAATGGTTATAGATACCAGTGTCAATAACGACGAAAACAGCAGCTCCCTGGATCTCCAATCGTCACGAGATTCCATCGACACTCTTCGAAATGTGACCATAAAGACGGAGCCACATAAAAACGATGGCTTCCAAGCTGTAGATGAAAGAGTGCTAGATTTGAAGTACAGCGCACCGCTGCAACCGCACCAGAGGAGTCTTAGTATGAATAGGATATCAGTACTAACAGACGCTACATCGCTGTCACTACCGAGGAGGCCGTCCTCACCTACAAGCAGTGCAAAGTCCTTGGCCTTGAGTGACCAAGGTTCGGTTCCAATGCCGCATATAGCTCTAGACCAGGTTCATAATCTAACCATCAAGAAGGAAAACCAGCTGTCTGAGCTAAAATGCGAGCAGTCAGTAGGCATGGACAAGCTAATCGGTGCTTTACACGGATCACCGCTTCTGGGCCGTCTACCTCGTGTTCAGTCAAGTGCCAGTACAGATTCTGCTGTACACTCAATGTACACACACAGTGTATACAGCAGTCCTTCGGCCAGCCCTCGGGCCTCCCGCCATTACACGCCTTCTTTATCACGCAACAACAGCGATGCCTCACACTCCTCCTGTTACTCTTATAGCTCAGAGTTCTCGCCGACACACTCTCCAGTACagGGTCGTCACCCTGGGCTTTTATACCGCGAAGCACCGGCAGCGTACGACACAGTGCATGATGACGAACCTGACGCCCCGGACGATAGGCTACATCATCACCAGGGCATCAGCCGGCAACAGCTTATAAATAGTCCGTGTCCGATCTGTGGTGACAAAATCAGCGGTTTCCACTACGGGATTTTCTCATGTGAATCTTGCAAAGGCTTCTTCAAGCGTACTGTACAAAACAGAAAGAATTACATGTGTCTAAGAGGCGGAAACTGTCCGGTCACTGTCACCACCAGGAAGAAGTGTCCGGCGTGTCGATTTGACAAGTGTCTCGGATGTGGAATGAAACTTGAAGcaattcgagaagacagaacacGCGGAGGTCGATCTACGTACCAGTGCTCGTACACGTTGTCAGGCGCCGCGTCCACTGGCTCCTTGCTATCGGCGCACGCGCCTACCACACTGAGACACGCGTCAAGCCTCACTTGCGTAAACGGACCTGGGTCTTATAGCAGCCGAGGTGAGTCAAGTAACAGCCAAGTAACGCCAGATATACCGCCATTATTGCAGGAAATAATGGACGtggaacatctatggcaatacAACGAGTCGGAACTCAGTCGGTTGGGCAAATCCACGGGCAGCCCCTCAGCTAATCCCCTGTTAGCCGCGAGTGGCATCACAGCACACAACTCCAGTCCGGACTTCTTGGCCGATCTGTGCAATATTGCTGACCACAGATTGTACAAAATTGTTAAATGGTGCAAGAGTTTGCCACTGTTCAAAAATATATCGatCGACGATCAAATCTGCCTGCTGATCAATAGCTGGTGTGAGTTGCTGGTGCTTTCGTGTTGCTACCGGGGTGTGAGCACGCCAGGGGAAGTCAGGGTAGGAGGAGGGAGGGGCATCACACTACAACAGAGTGCCAAGTTGGGTTTGACACCATGCATAGAGCGCATGTTGAGTTTCACGGACCATTTGAGGAGATTAAGAGTCGACAGATACGAGTATGTCGCGCTTAAAGTCATTGTACTTCTCACTTCCGACGCGCCGGATCTCCGCGAAGTGGAGAAAGTACGAGCATCTCAAGAGAAAGCTTTAGCAGCACTACAAGCTTATATCGCGACACATTCTCCCGGTACTCCTGCTAAGTTTGGAGAGCTGCTGCTGCGTATACCCGAGCTGCAAAGAACTTGTCAGtttttcaTGCAAGTCGGGAAAGAAATGTTGAATCCTGCCAACAAAAGTAAAGACGGTGATGGACCAAGTTTTAACTTGCTCATGGAACTTTTACGCGGCGATCACTGA
Protein Sequence
MPNGRGQFSYSSSGVRISVSSEPHDEDSTDAEISKIDFSQHQYEVNMRNKKKRSASGTHCELPNNERERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEPHKNDGFQAVDERVLDLKYSAPLQPHQRSLSMNRISVLTDATSLSLPRRPSSPTSSAKSLALSDQGSVPMPHIALDQVHNLTIKKENQLSELKCEQSVGMDKLIGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPGLLYREAPAAYDTVHDDEPDAPDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVTTRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHAPTTLRHASSLTCVNGPGSYSSRGESSNSQVTPDIPPLLQEIMDVEHLWQYNESELSRLGKSTGSPSANPLLAASGITAHNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLQQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPDLREVEKVRASQEKALAALQAYIATHSPGTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00042698;
90% Identity
iTF_01076559;
80% Identity
iTF_00823131;