Hscr029608.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438991.1:7446900-7449810[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-08 5.6e-06 27.0 0.1 7 40 10 41 9 46 0.86
Sequence Information
- Coding Sequence
- ATGGATAAGAATAAACCACACGAAGCTAATGCATTGAAAGCTGTCGACACAGGTGTTTCACTGAGAAAAGCTGCTGCAGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACCGAAGAACAAAAAATAGTTGACTGGATTCTTTTTAGAGCGCAGCGTGGTTTACCAGTAACTAAAACagagctcttagattctattcaacgATTTgtgaaaatgtcaaaaaaagaaaCTCCGTTTATTGATAGTCGGCCGAGCCGACATTGGTATGAGGGCTTTCGAAAACGACATCCTCAAATGTCAATCAGGAAACCACAACATCTTACTCATAGTAGAGCAGCAGTGACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCTAAGTATTTAACTGAAAAAAACTTAATGGAGATTTCTTCTATGAGAATTTTCAACTGTGACGAGACTTATGTAAGTTTATGCCCTCCATCTGAAAAAGTATTGTTAGCTAAAGGATCCCATTCAGCATATAAGGTGGTTGATTCTGATAAAGAAGgatttactgttttatttatgtatagtgCTAATGGTGATCGTGCACCTCCCATGATCATGTTTCCTTACAAAGAAGAAGTACCAgagaaaattgtcaaaaattgTCCTGAAGGTTGGGGTGTTGGGCTTTCAGATAATGGGTGGATGACCTCTGAGTCATTCTATgagtatataacaaatatattttatccatGGCTAGTGAAACAAGGAactcagaaaaagaaaatgatcggaaaataa
- Protein Sequence
- MDKNKPHEANALKAVDTGVSLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQRFVKMSKKETPFIDSRPSRHWYEGFRKRHPQMSIRKPQHLTHSRAAVTGDDLKDWFDEQAKYLTEKNLMEISSMRIFNCDETYVSLCPPSEKVLLAKGSHSAYKVVDSDKEGFTVLFMYSANGDRAPPMIMFPYKEEVPEKIVKNCPEGWGVGLSDNGWMTSESFYEYITNIFYPWLVKQGTQKKKMIGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004159;
- 90% Identity
- iTF_01004159;
- 80% Identity
- -