Hscr004192.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438969.1:19053159-19055126[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 3.1e-09 37.4 0.0 5 38 19 52 18 57 0.89
Sequence Information
- Coding Sequence
- ATGGTACGTACatacaagaaaaaaactaaaagagGAGAGTGGTCAAAAATTTCTATGAAAACAGCTATAGataaagtattaagtaaagATATGGGCTACAGAAAAGCCGCTTCTGAATACGGAGTGCCTCAGACTACTTTAGAGCgatatgttaagaaaatgaaAGAAGGTGGTGAAGTTACGATTGGTGTACCTTTGGGCCCTAAACAAcctatatttacaacaaaagaaGAAGACGAAATGGTGACATATCTAAAACATATGGAAGAACGTCTTTTTGGACTTACAACTCTCGATCTGAGACGTCTAGCATATCAACTGGCTGTGAGAAATAGTAAGGCGCACAATTTTGATACTGACAAGCAGATGGCAGGGGTTGATTGGCTCAAAGGTTTCTTAAGGCGTCATCCAGATTTATCCATTCGAAAGCCCGAAGCCACATCAGCAGCTAGAGCAATGGGATTTAATAAAGTGGCCGTTCGTAAATTCTACCAGTTGCTTGGAGAGATTTATGACAAGTATAAGTTAACTCctgacaaaatatataattgtgatGAAACTGGTATCTCTGTTGTATCTAAAACCAAGAGCAAAATATTGGCCCTGAAAGGGCGAAAACAAGTAGGCTCGTTATCATCTGCAGAACGCGGCCAGACTATAACAGTAGAAATATGTTTTAACGCTGCTGGAACCTACATGCCTCCACTGATGATTTTCCCGAGACAACGAATGAAACCAGAATTGTTAGATCACGCCCCACCAGGTACTGAAGGTGTTTGCAATGCTCGAGGCTGGATaactactgaaatatttttgacttgGTTCAAAAAGTTTATCAGATTCTCTGGAGCTACTCGTACTAATCATATGTTGCTGCTTCTGGATGGGCATGTAAGTCACACTCAAAATTTGGAAGTAATTGATCTGGCACGTAAAAATGGAGTTATAATTCTTTGCTTTCCACCTCACTGCACACATAAAATGCAGCCAGCAGATGTTGCATTTATGAGGCCACTAAGTACATATTATGACCATGCTGTTTCGGCCTGGTTGAGATCACACCCAGGGCGTGTGGTAACTGTATTTCAGATAAGTGAAATATTTGGAAATGCATACATTCAGGCAGCTACAATGTCTACAGCAATTAACGCATTCAGAAAGTGTGGCATATGGCCgtataatcaaaataattttacggATGCCGATTTCATATCTGCTGCAACTACTgatatacaaaatattgaaaactCGTCTAGTGTAGAGCAACAGAGAGTTTCAGAAGCTGAAGGGCCTCAGTATGAGGTAGTTCCATCTGTGCCTTCAACCACAGTAGCCACGACTGTATCTTCAACGGCCACAACATCCCATCCTGGAACAGTTACAACAAGACCTGAAGTTACAACAGAATCATGCACTCCAGTAAGAATAGATTTTATCACCGATCATAACGAGCAAGTCACACCTGAGACGAGTAAAACACCTGCTCCCGAACctgaatctggatgttcttttGCTTCTAAATCTCCCATCCGTGCAGTGTGCCGCGATCTTACATCTAGCTTTGAAAATGTATCCCCTGGTGATATTTTGCCGATCCCTTTGGTCCAACGGACTGAAAAGAGGAAGCAATACCGGAGAGGAAAAACAGCCGTCATTACTTCAACTCCTTATAAAAATGAGCTggagaatttaaaaaaactgaagaAAGTATCCAATCCTAATGATCCCCGGCTCAAAAAAAATGCTAAGAAGAAACAAAAGACTACAATTGCAGCCGAAAcgaaaaataatgatgatgaagatgcaATTTGTCTCTATTGTAAGGATGAAAATCATACTTTTCTGAAATCATCCGAAGGTTGGGTAGGCTGCCAGCTTTGTGGACGTTGGGCTCACAATGCTTGTGCTGGTGTGGATGATGATAACACCGAAGAAattcatatttgtatttattgtgataATAATTAG
- Protein Sequence
- MVRTYKKKTKRGEWSKISMKTAIDKVLSKDMGYRKAASEYGVPQTTLERYVKKMKEGGEVTIGVPLGPKQPIFTTKEEDEMVTYLKHMEERLFGLTTLDLRRLAYQLAVRNSKAHNFDTDKQMAGVDWLKGFLRRHPDLSIRKPEATSAARAMGFNKVAVRKFYQLLGEIYDKYKLTPDKIYNCDETGISVVSKTKSKILALKGRKQVGSLSSAERGQTITVEICFNAAGTYMPPLMIFPRQRMKPELLDHAPPGTEGVCNARGWITTEIFLTWFKKFIRFSGATRTNHMLLLLDGHVSHTQNLEVIDLARKNGVIILCFPPHCTHKMQPADVAFMRPLSTYYDHAVSAWLRSHPGRVVTVFQISEIFGNAYIQAATMSTAINAFRKCGIWPYNQNNFTDADFISAATTDIQNIENSSSVEQQRVSEAEGPQYEVVPSVPSTTVATTVSSTATTSHPGTVTTRPEVTTESCTPVRIDFITDHNEQVTPETSKTPAPEPESGCSFASKSPIRAVCRDLTSSFENVSPGDILPIPLVQRTEKRKQYRRGKTAVITSTPYKNELENLKKLKKVSNPNDPRLKKNAKKKQKTTIAAETKNNDDEDAICLYCKDENHTFLKSSEGWVGCQLCGRWAHNACAGVDDDNTEEIHICIYCDNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01088036; iTF_00448073; iTF_01088042; iTF_01280139; iTF_00822927; iTF_00819991; iTF_00822848; iTF_01088013; iTF_01087987; iTF_01088019; iTF_01088020; iTF_01088033; iTF_00784323; iTF_00784324; iTF_00784325; iTF_00666438; iTF_00785131; iTF_00819083; iTF_00785132; iTF_00785133; iTF_00785134; iTF_00801723; iTF_00783358; iTF_00783359; iTF_00783357; iTF_01178350; iTF_01178348; iTF_01178349; iTF_00872975; iTF_01088021; iTF_01088245; iTF_00276214; iTF_00276213; iTF_00276215; iTF_00744536;
- 90% Identity
- iTF_00448073; iTF_01280139; iTF_00822927; iTF_01088033; iTF_01088036; iTF_00819083; iTF_01088013; iTF_01178350; iTF_01178348; iTF_01178349; iTF_00744536; iTF_00801723; iTF_00783357; iTF_00784323; iTF_00784324; iTF_00784325; iTF_00785131; iTF_00785132; iTF_00785133; iTF_00785134; iTF_00819991; iTF_00783358; iTF_00783359;
- 80% Identity
- -