Hscr021096.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438983.1:1135205-1140059[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.093 24 5.8 0.0 27 39 7 19 4 23 0.88 2 3 7.2e-15 1.8e-12 47.8 0.3 2 45 37 81 36 81 0.96 3 3 5.6e-17 1.4e-14 54.5 0.0 1 42 88 130 88 132 0.95
Sequence Information
- Coding Sequence
- atgtccctccaacacaaagGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAAGGCATCCGCCTGTCGGCGCCCTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGCAGCGCGCACTCGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCCACCTACGGCATACCCACCGGAACGCTGTACGGTAGATGTAAGCGCGAAGGTATAGAGTTATCCCGGTCCAACCCCACGCCGTGGTCGGAGGATGCCATGGGAGAGGCACTTGAGGCAGTTAGGATAGGTCAGATGTCGATAAACCAGGCAGCGATACATTTCAACCTGCCATATTCTTCGTTGTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGTGTCCTTCAACACCAGCAGCAACAACAAGACGTGCAAAAAATAGAAATGGACGTTCCACAACACGAGACGCACCAATACTACCATCAACTGCCTCCTCCACTCGACCAAGAGCCACAAACGTTTGCGCATGTGACCGAATATCCCCATAACACCTATATTCACGACCAATACGGCCAATATTACCAACAATTTAGTGGTATAGCGACCAGCTGA
- Protein Sequence
- MSLQHKGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQRALAAIRAGASSVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVLQHQQQQQDVQKIEMDVPQHETHQYYHQLPPPLDQEPQTFAHVTEYPHNTYIHDQYGQYYQQFSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281050;
- 90% Identity
- -
- 80% Identity
- -