Cnup033929.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776095.1:8147779-8151158[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 45 5.6 0.0 27 39 6 18 5 22 0.89 2 3 3.5e-14 1.3e-11 45.8 0.0 2 45 36 80 35 80 0.96 3 3 4.2e-18 1.6e-15 58.3 0.0 1 42 87 129 87 131 0.95
Sequence Information
- Coding Sequence
- atgctatttatatCAGGTATACCAAGCAGCACTTTATACAAGATAGCGCGTCGCGAAGGTATCCGCTTGTCGGCTCCGTTTAATGCGGCTCCGACGTCATGGCGCCGAGCTGATCTGCAGCTGGCGCTGGCTTCTATACGCTGTGGGGCCAGCTCCGTGCAACGTGCTGCTACTACTTACGGGATACCAActgGCACACTTTACGGTCGATGTAAACGCGAGGGCATCGAGCTGTCCCGGTCTAACCCCACGCCGTGGTCTGAAGACGCTATGGGAGAAGCACTCGAAGCTGTTAGAGTGGGCCAGATGTCAATAAACCAAGCGGCGATCCACTATAACTTACCGTATTCATCACTATATGGAAGATTTAAAAGATGCAAGTACCAGATGCAGGGCGTCTCCCAAAACCAGCAACACCCGCAAGACCTACAGAAATCGGAAATAGATACTCAAACACACGAGGTGCACCAATACTACAACCAAGTCCCGACCCCTCACGACCACGACCCGCAGACATACACAAATATGCCTGAATATCCCCAACACACACATATGCATGACCAATACGGCCAATATTACCAAACTTTCAACAGTATAGCGACCAGCTGA
- Protein Sequence
- MLFISGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVSQNQQHPQDLQKSEIDTQTHEVHQYYNQVPTPHDHDPQTYTNMPEYPQHTHMHDQYGQYYQTFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822829;
- 90% Identity
- -
- 80% Identity
- -